Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01347 GTTGTTTTCTCTTGTAAATATAGCTTGCCCTTTATTTTCTCGCGATTACAAACCAGTCCTCACAATTATGTAATTATTGGGGTATTCCAGACTACATCAAGGCGTTTGGCTGACAGGAAGGTGCAGAAGTTTGAGAAGAACGTGACAAAGAGGGGCGCTGTGCCTGAGACCTCCAAGAAAGGAAAGGACTATCCTGTTGGTCCTATTCTTCTTGGATTCTTCGTATTTGTTGTCATTGGATCTTCCCTCTTTCAAATAATCAGGACAGCAACTACCGGAGGCATGGCATAA 291 42.96 VVFSCKYSLPFIFSRLQTSPHNYVIIGVFQTTSRRLADRKVQKFEKNVTKRGAVPETSKKGKDYPVGPILLGFFVFVVIGSSLFQIIRTATTGGMA 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50389757 50390571 + Bma024460.1 Bma06g01347 84849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01347 96 Pfam Ribosome associated membrane protein RAMP4 34 89 IPR010580 GO:0005783
Bma06g01347 96 PANTHER STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN 29 96 - -
Bma06g01347 96 PANTHER STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4 29 96 IPR010580 GO:0005783
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01347 - - - mesc:110629484 123.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01329 Bma-Chr4:45467109 Bma06g01347 Bma-Chr6:50389757 4.74E-23 dispersed
Bma06g01347 Bma-Chr6:50389757 Bma07g00030 Bma-Chr7:1243979 3.05E-20 dispersed
Bma02g01250 Bma-Chr2:54564153 Bma06g01347 Bma-Chr6:50389757 3.87E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1262 Blo01g00178 . . Bda11g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00192 . . Bda11g00390 Bpe14g00793 . . Bma06g01347 . . . . . . . Cpe17g01075 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002650 2 2 3 3 3 0 4 1 1 1 0 1 3 1 2 4 0 3 1 0 2 2 2 0 2 2 1 4 2 0 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01347 Bma_Chr06 FPKM 25.626268 27.195412 31.885199 30.918396 22.458302 20.487354 23.59305 100.49868 102.88327 102.103584