Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01360 ATGGATTTTTTGCAGAAAGAAAAGGAAGGAATCGCACAAAACCTTTTCATTCAGCTTCAACAAATAAAACCCATTATTTTCCAGGAAAAGTTACAGATTCAAGACCCCTCTACGAATATTTGTAATTCAAGCTTCCAAGGTCACAACAATGGCGGATGTAGAGGAGAGAGAAATGAGCCAAGGGAGAGAGAGCTTCTGTTCGAGAAAATCGTGACTCCAAGCGATGTAGGAAAGCTAAACAGGCTGGTGATTCCAAAACAATTTGCAGAAAAATACTTTCCGTTAGACTCTTCCATGAACGAGAAAGGTCTTTTTCTGAGCTTCGAAGACCGAAACGGACAACAATGGCGGTTCCGCTACTCTTACTGGAAAAGCAGCCAGAGCTTCGTCATGACAAGGGGCTGGAGTCGCTTTGTAAAAGATAAAAAACTCCACGCTGGAGATGTAGTTTCTTTCGAACGTTATGGTGCAGAAATGGGGAAAAACAGCTTCCATTTTCGGATAGATTGGAAGCATCGTTCTGATATAATTCTTCGTCAAAGAGACCTCCATTTTAATGGAAAATTACCAAAGTTCAATCTCCCCAATCTCGGGCTCGATTCGTTTCATAATTTAAACCCACTGTCGGCGAGCTCTCAGAGATCCATGGCGGTAACGGACCCTGTCACTCTAATCCGCCATTGTAGAAACAGTGAAGCTAAACCTAAACGACTGAGACTATTTGGAGTAAACCTGGACTGCCCAGAAGAGCCAAAACGACACAGTTATTCTCGTTTCGAGTCTTCTTCTACTCCCTCTGGCAATGAAACTCCATTGTTGCAGACTGAAACTCCGTTTTCCAGTAGAGGAAACGCTTCAGCTTTCTTCCCATTTCACTGGAATCCATAG 888 43.02 MDFLQKEKEGIAQNLFIQLQQIKPIIFQEKLQIQDPSTNICNSSFQGHNNGGCRGERNEPRERELLFEKIVTPSDVGKLNRLVIPKQFAEKYFPLDSSMNEKGLFLSFEDRNGQQWRFRYSYWKSSQSFVMTRGWSRFVKDKKLHAGDVVSFERYGAEMGKNSFHFRIDWKHRSDIILRQRDLHFNGKLPKFNLPNLGLDSFHNLNPLSASSQRSMAVTDPVTLIRHCRNSEAKPKRLRLFGVNLDCPEEPKRHSYSRFESSSTPSGNETPLLQTETPFSSRGNASAFFPFHWNP 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50471857 50472744 + Bma024473.2 Bma06g01360 84862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01360 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 263 IPR044800 GO:0003700
Bma06g01360 295 CDD B3_DNA 66 168 IPR003340 GO:0003677
Bma06g01360 295 SUPERFAMILY DNA-binding pseudobarrel domain 64 175 IPR015300 -
Bma06g01360 295 MobiDBLite consensus disorder prediction 258 281 - -
Bma06g01360 295 Pfam B3 DNA binding domain 67 165 IPR003340 GO:0003677
Bma06g01360 295 ProSiteProfiles B3 DNA-binding domain profile. 67 172 IPR003340 GO:0003677
Bma06g01360 295 SMART B3_2 67 162 IPR003340 GO:0003677
Bma06g01360 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 50 263 - -
Bma06g01360 295 MobiDBLite consensus disorder prediction 254 281 - -
Bma06g01360 295 Gene3D - 61 182 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g01206 Bma06g01360 CCT
Bma04g00935 Bma06g01360 CCT
Bma05g01206 Bma06g01360 ECH
Bma04g00935 Bma06g01360 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01360 Bma-Chr6:50471857 Bma14g00089 Bma-Chr14:1257805 4.56E-54 dispersed
Bma14g00711 Bma-Chr14:7769028 Bma06g01360 Bma-Chr6:50471857 1.68E-31 dispersed
Bma06g01360 Bma-Chr6:50471857 Bma04g00935 Bma-Chr4:13347376 8.83E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57528 PF02362 B3 1.30E-28 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01360 - - cpap:110816522 199.134