Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01363 ATGGAGGGAGGTCAAAGATCTGGAATTTCAAATTATGAACTTCAAATCTCGTTTGCTACTCCACCTCAAGCGATCAATGAAATGGGTTTTGTTCAGTTCGAAGAAAACCAGGTTTTGAGTTTTATGGAGCCTTCCCAATCTTCTCAGATTTCACAAAACTTCGCGACGCCCGCCGTTACGGCCCCTCCCAAGAGCTGCAACTCCGCCGTAAATATCGCCGTGGGTGGCTTCAGTAATCGAGCTCTTGTTAGTAGGCCTTCTTGGGATAACGATCAGGTCGGAAGGTTGGAAACTAAGGATGCCGGTGAGGAGAACTGCACTGGAAATACCAGCGATGGCAGCAATTCATGGTGGAGAAGCTCATCTGCAGAAAAGAGCTGCAAGGTAAAGGTGAGGAGAAAGCTTAGAGAACCAAGATTCTGTTTCCAGACAAGAAGTGATATTGATGTGCTGGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAAAATAGCCTCCATCCCAGCAGAAGCTACTACCGTTGTACTCATAGCAATTGTCGAGTAAAGAAGAGGGTCGAAAGATTGTCGGAGGATTGCCGGATGGTGATAACAACATATGAAGGTAGACACAATCACTCTCCTTGCGATGATTCGAATCCGTCAGAGCAAGAATGCTTTACGTCTTTTTGA 681 45.52 MEGGQRSGISNYELQISFATPPQAINEMGFVQFEENQVLSFMEPSQSSQISQNFATPAVTAPPKSCNSAVNIAVGGFSNRALVSRPSWDNDQVGRLETKDAGEENCTGNTSDGSNSWWRSSSAEKSCKVKVRRKLREPRFCFQTRSDIDVLDDGYKWRKYGQKVVKNSLHPSRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNPSEQECFTSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50485176 50487261 - Bma024476.1 Bma06g01363 84865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01363 226 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01363 226 SMART WRKY_cls 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01363 226 Gene3D WRKY domain 138 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma06g01363 226 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 224 IPR044810 GO:0003700
Bma06g01363 226 SUPERFAMILY WRKY DNA-binding domain 143 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma06g01363 226 ProSiteProfiles WRKY domain profile. 146 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01363 226 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 16 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01046 Bma-Chr3:12512279 Bma06g01363 Bma-Chr6:50485176 9.42E-24 dispersed
Bma03g01049 Bma-Chr3:12636146 Bma06g01363 Bma-Chr6:50485176 3.66E-49 dispersed
Bma06g01363 Bma-Chr6:50485176 Bma13g00171 Bma-Chr13:1999694 6.35E-17 dispersed
Bma06g01363 Bma-Chr6:50485176 Bma13g00167 Bma-Chr13:1952044 1.03E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57529 PF03106 WRKY 1.50E-22 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01363 - - vvi:100254670 335.88