Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01383 CTTGAGCAAGAGCTACAACATCAAGTGAAAATAATGACTCTTTTCTCTCATTTCTTCTTCAAATTTGTGCTTCTTGTGTCGGTTTCTCTTTCCCCTTGTTTTTGCTTCAACCCGAAGCGCTTATTCAATGTCTCTGAGTCTCAACCCACCAATGGTTGGTCGTCTGCCGGAGCAACGTGGTATGGAGGCGCCACGGGTGATGGGAGCGATGTAGGGGGTGCTTGTGGGTATAAAACAGCAGTATGGCAACATCCATTTTCTTCATTTATAGCAGCTGGAGGGCCGTCACTGTTCAAATCAGGGCAAGGATGTGGAGCTTGTTATCAGCATAACCCTGTGACTTTTCAGGTGATGTGCACGCAAAATTGGGCTTGCTCCGGCAGTCCGGTGACGGTGGTTATCACCGATAGTTGTCCAGGCGGTGTTTGTGCTTCTGATGCCGTCCATTTTGACTTGAGCGGCACTGCCTTTGGGGCCATGGCTAAGTCTGGACAACAAGATCAACTTCGTTCTGCAGGAAGTCTTCAAATTCAATACCAAAGGGTCCAGTGCAGTTATCCCGGCACCCCTCTCAGTTTCTCCGTAGATTCAGGCTCGAATTCGAACTACTTCGAAACCCTAATTGAGTATCAATGGGGAGATGGGGATCTTTCTTTAGTAGAAATCAAGCAAGGTGGAGGCTCAAACTGGTGGGCTAAAATGCAACATTCTTGGGGTGCTCTTTGGCAATTCAATAGCGGGTCGACTTTACAAGCCCCATTTTCTCTCCGACTAACCTCGCTGTCGGGTCAAACGATCGTCGCCAACGATGTCATTCCGGTCGGTTGGAAACCTGGCCAAACTTATAGATCAAGCTAA 858 48.25 LEQELQHQVKIMTLFSHFFFKFVLLVSVSLSPCFCFNPKRLFNVSESQPTNGWSSAGATWYGGATGDGSDVGGACGYKTAVWQHPFSSFIAAGGPSLFKSGQGCGACYQHNPVTFQVMCTQNWACSGSPVTVVITDSCPGGVCASDAVHFDLSGTAFGAMAKSGQQDQLRSAGSLQIQYQRVQCSYPGTPLSFSVDSGSNSNYFETLIEYQWGDGDLSLVEIKQGGGSNWWAKMQHSWGALWQFNSGSTLQAPFSLRLTSLSGQTIVANDVIPVGWKPGQTYRSS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50604388 50608987 + Bma024497.1 Bma06g01383 84885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01383 285 PANTHER EXPANSIN-B2-RELATED 17 284 - -
Bma06g01383 285 Pfam Expansin C-terminal domain 192 273 IPR007117 -
Bma06g01383 285 Gene3D - 185 285 IPR036749 -
Bma06g01383 285 PANTHER EXPANSIN-B3 17 284 - -
Bma06g01383 285 SMART dpbb_1 90 179 IPR007112 -
Bma06g01383 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 189 IPR007112 -
Bma06g01383 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 284 IPR007117 -
Bma06g01383 285 SUPERFAMILY PHL pollen allergen 190 284 IPR036749 -
Bma06g01383 285 SUPERFAMILY Barwin-like endoglucanases 49 188 IPR036908 -
Bma06g01383 285 PRINTS Expansin/Lol pI family signature 172 188 IPR007118 GO:0005576
Bma06g01383 285 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Bma06g01383 285 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Bma06g01383 285 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Bma06g01383 285 PRINTS Expansin/Lol pI family signature 270 284 IPR007118 GO:0005576
Bma06g01383 285 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bma06g01383 285 PRINTS Major pollen allergen Lol pI signature 92 103 IPR005795 GO:0005576|GO:0019953
Bma06g01383 285 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Bma06g01383 285 PRINTS Major pollen allergen Lol pI signature 209 224 IPR005795 GO:0005576|GO:0019953
Bma06g01383 285 PRINTS Major pollen allergen Lol pI signature 260 277 IPR005795 GO:0005576|GO:0019953
Bma06g01383 285 PRINTS Major pollen allergen Lol pI signature 240 257 IPR005795 GO:0005576|GO:0019953
Bma06g01383 285 Gene3D - 41 184 IPR036908 -
Bma06g01383 285 Pfam Lytic transglycolase 91 179 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01383 Bma-Chr6:50604388 Bma08g00575 Bma-Chr8:34100714 2.19E-64 dispersed
Bma06g01383 Bma-Chr6:50604388 Bma06g01384 Bma-Chr6:50611607 9.90E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01383 - - qsu:112000124 353.214