Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01384 ATCTTAACAATGGCTTTTTACTGTAATTTCTTCCTCAAAGTCGTTCTTCTCCTCTTGCTCTCGCTTTCCGGTTGCTTTTGCTTCCACCGGAAGCTCGCCTCCTACAACGTTTCCGAGTCTCAATCTACCGCCAGCTGGTCTGCTGCCGGGGCAACGTGGTATGGAAGCCCAACCGGAGCCGGAAGCGATGTAGGAGGAGCATGTGGGTATAAAGCAGCAGTAGGGCAACCTCCATTTTCTTCACTTATAGCAGCTGGAGGGCCTTCATTGTTCAAATCAGGGAAAGGATGTGGAGCTTGTTATAAGGTGATGTGCACGCAAAATTCGGCTTGCTCCGGCAACCCGGTGACAGTGGTTATCACCGATAGTTGTCCAGGCGGTGTTTGTGCTTCTAATGCCGTCCATTTTGACTTGAGTGGCACCGCTTTCGGGGCCATGGCTAAATCTGGACAAGAAAATCAACTGCGCGCGGCAGGAGTTCTTCAAATTCAATACCAAAGGGTCCAGTGCAGTTATCCCGGCACGCCCCTCACTTTTGCCATAGACGCAGGCTCGAATCCGTATTACTTGGCAACGCTAATTAAGTATCAAGGTGGAGATGGTGATCTTTCTTTAGTAGAACTCAAGCAAGGCCAAGCATCGAACCCGTGGGTTCAAATGCAACACTCTTGGGGTGCTGTTTGGAAATTCAACAACGGTTCGGCTTTACAGGGTCCATTTTCTCTCCGATTAACCTCGCTCTTGTCTAGTCAATCAATCGTCACAAACAACGTCATTCCAGTTAGTTGGCAACCAGGCCAAATTTATACATGA 813 48.95 ILTMAFYCNFFLKVVLLLLLSLSGCFCFHRKLASYNVSESQSTASWSAAGATWYGSPTGAGSDVGGACGYKAAVGQPPFSSLIAAGGPSLFKSGKGCGACYKVMCTQNSACSGNPVTVVITDSCPGGVCASNAVHFDLSGTAFGAMAKSGQENQLRAAGVLQIQYQRVQCSYPGTPLTFAIDAGSNPYYLATLIKYQGGDGDLSLVELKQGQASNPWVQMQHSWGAVWKFNNGSALQGPFSLRLTSLLSSQSIVTNNVIPVSWQPGQIYT 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50611607 50612941 + Bma024498.1 Bma06g01384 84886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01384 270 Gene3D - 171 270 IPR036749 -
Bma06g01384 270 Gene3D - 29 170 IPR036908 -
Bma06g01384 270 SMART dpbb_1 83 165 IPR007112 -
Bma06g01384 270 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Bma06g01384 270 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Bma06g01384 270 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Bma06g01384 270 PRINTS Expansin/Lol pI family signature 257 270 IPR007118 GO:0005576
Bma06g01384 270 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Bma06g01384 270 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Bma06g01384 270 PANTHER EXPANSIN-B2-RELATED 11 269 - -
Bma06g01384 270 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Bma06g01384 270 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Bma06g01384 270 PRINTS Major pollen allergen Lol pI signature 226 243 IPR005795 GO:0005576|GO:0019953
Bma06g01384 270 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Bma06g01384 270 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Bma06g01384 270 PRINTS Major pollen allergen Lol pI signature 125 140 IPR005795 GO:0005576|GO:0019953
Bma06g01384 270 Pfam Expansin C-terminal domain 178 260 IPR007117 -
Bma06g01384 270 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
Bma06g01384 270 Pfam Lytic transglycolase 84 165 IPR009009 -
Bma06g01384 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 270 IPR007117 -
Bma06g01384 270 PANTHER EXPANSIN-B3 11 269 - -
Bma06g01384 270 SUPERFAMILY Barwin-like endoglucanases 41 174 IPR036908 -
Bma06g01384 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 175 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00730 Bma-Chr3:6522555 Bma06g01384 Bma-Chr6:50611607 3.64E-65 dispersed
Bma06g01384 Bma-Chr6:50611607 Bma08g00575 Bma-Chr8:34100714 3.27E-70 dispersed
Bma06g01383 Bma-Chr6:50604388 Bma06g01384 Bma-Chr6:50611607 9.90E-127 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01384 - - tcc:18614378 354.369