Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01401 ATGGAAAAGGAGTTCTTCGTCAATGAAGGAGATGGCACTAGCACGCCTCAGACGGCCTGGAATTACTCGCAACTTCAGAGCTCTATTTACAACCAGAATTGGGAAAATTCGATGGATCAAAGTGATCCCTTTGAGTCTGCTTTGAGCTCCATTGTATCTTCTCCTGTAGCTTCCTCCGCCATTAACGGCGGTGGAGGAGAAAATTTCATGCTCAGAGAACTTATAGGAAGGCTCGGAAGCATCTGCAATTCCGGCGAGATTTCGCCGCATTCTTATGTCGGAGGAAGTACTAATACGTCTTGTTATAACACTCCATTAAATTCCCCCCCGAAGCTTAATTTATCAATGCCCGATCCGCGTGCCAGAGCTGGTTTTCAGTTTTCAGGTCATCATTTGCCTTCCCATCCAAATATTTCTCCATTTTCAGCGGACCCAGGGTTTTCAGAAAGAGCTGCGAGGTTTTCATGTTTTAATAACAATGGCAGCTTCAACGGGCGAATGGGTTTGAAAGAAACTGAAAAGACGGCTCGATCGATTTCTAGAGTTGATTCAGGCAAGTTCTCGAGAGTTTGTGGCAACCAATCTAAATCAGGAGGTCCAGAAGGCAAAGACGGGAATTCGATTCCTGAGAAGAAGTTCAACTGGTTTTCCAGATCATCAACTCCAGAAAATACAGAATTTGGGGGTTCTAGAGAGGGATCTACACTTTCTGAGCAGAATCCAGCTGGGGAATCGAGAGTAAAAGTCAAAGGAGATTATAATTCAAGAAAAAGAAAATCAATTCCCAAAGGAGAAGCAAAAGAGTCCAAGGCTGCAGAAGAGAAAGACGAATCGAAAACAAAGAAAAACAAACCAACCGAAGCTTCTGGGAATGAAAAGGATGCTTCGAAGGCAAAGGAAGAACCTACTGCTGACATGAAAGAAGAACAAGATGGGAATCAGAAACAGACAAAGGAAAACTCAAAGCCTCCAGAACCTCCAAAAGATTACATCCATGTCAGGGCCAGGAGGGGTCAGGCAACTGATAGCCATAGTTTGGCTGAAAGAGTTAGAAGGGAGAAAATAAGCAAAAGAATGAAGTTTCTTCAGGATCTTGTTCCTGGATGTGACAAGGTAACAGGAAAAGCAGTGATGCTTGATGAAATTATAAACTATGTCCAGTCTTTGCAGCGCCAAGTTGAGTTTCTATCTATGAAATTATCGACCATTAATCCAAGGTTGGATATAACTATGGAGATCTTTCAGTCTCGTGGGTCTTTTCCACATACTGTTCATAATTCAGATCCATCGGTTCCACCATTTTCCTCTTCTTATCAGCCTCTGCAATTCCCGGCCATTAATGGCGGAGCCTCTTCTGGGACTGAGTTGAATCTTCCTATGAACACTTTAAATGATGTATTTAGAAGAAATAATCTTCACGCTGGATATGGAGAATCTTCGCACCAAGTTTCAGAATTCTGGGAAGACGACCTCCACAGTGTAGTTCAAATGGGTTATGATCAGAATCAGCAACAGAGCTTTCATGGTAAGAAAAATTTCATTTTTTGCTCTTACTGA 1557 42.52 MEKEFFVNEGDGTSTPQTAWNYSQLQSSIYNQNWENSMDQSDPFESALSSIVSSPVASSAINGGGGENFMLRELIGRLGSICNSGEISPHSYVGGSTNTSCYNTPLNSPPKLNLSMPDPRARAGFQFSGHHLPSHPNISPFSADPGFSERAARFSCFNNNGSFNGRMGLKETEKTARSISRVDSGKFSRVCGNQSKSGGPEGKDGNSIPEKKFNWFSRSSTPENTEFGGSREGSTLSEQNPAGESRVKVKGDYNSRKRKSIPKGEAKESKAAEEKDESKTKKNKPTEASGNEKDASKAKEEPTADMKEEQDGNQKQTKENSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQRQVEFLSMKLSTINPRLDITMEIFQSRGSFPHTVHNSDPSVPPFSSSYQPLQFPAINGGASSGTELNLPMNTLNDVFRRNNLHAGYGESSHQVSEFWEDDLHSVVQMGYDQNQQQSFHGKKNFIFCSY 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50785189 50787329 - Bma024516.1 Bma06g01401 84903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01401 518 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 26 510 IPR024097 GO:0006355
Bma06g01401 518 MobiDBLite consensus disorder prediction 212 242 - -
Bma06g01401 518 MobiDBLite consensus disorder prediction 249 346 - -
Bma06g01401 518 Gene3D - 336 410 IPR036638 GO:0046983
Bma06g01401 518 CDD bHLH_AtBPE_like 329 414 - -
Bma06g01401 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 408 IPR036638 GO:0046983
Bma06g01401 518 SMART finulus 345 395 IPR011598 GO:0046983
Bma06g01401 518 Pfam Helix-loop-helix DNA-binding domain 343 390 IPR011598 GO:0046983
Bma06g01401 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Bma06g01401 518 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 26 510 - -
Bma06g01401 518 MobiDBLite consensus disorder prediction 165 346 - -
Bma06g01401 518 MobiDBLite consensus disorder prediction 187 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00138 Bma-Chr1:1326386 Bma06g01401 Bma-Chr6:50785189 6.30E-38 dispersed
Bma03g01225 Bma-Chr3:19434382 Bma06g01401 Bma-Chr6:50785189 1.82E-40 dispersed
Bma05g01223 Bma-Chr5:51635572 Bma06g01401 Bma-Chr6:50785189 3.10E-109 dispersed
Bma06g00747 Bma-Chr6:38766134 Bma06g01401 Bma-Chr6:50785189 5.50E-60 dispersed
Bma06g01401 Bma-Chr6:50785189 Bma09g00586 Bma-Chr9:42986767 4.67E-78 dispersed
Bma15g00611 Bma-Chr15:7800367 Bma06g01401 Bma-Chr6:50785189 2.69E-21 dispersed
Bma06g00810 Bma-Chr6:41583850 Bma06g01401 Bma-Chr6:50785189 9.13E-33 transposed
Bma02g01005 Bma-Chr2:51132248 Bma06g01401 Bma-Chr6:50785189 2.69E-57 wgd
Bma04g00989 Bma-Chr4:15919755 Bma06g01401 Bma-Chr6:50785189 5.50E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57533 PF00010 HLH 1.20E-05 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01401 - - vvi:100259005 546.969