Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01402 TTTTCACTACCACGTTTGTTTCAGGTAGCTGAGAAGCCTAGCATAGCTCTCTCCATAGCTACTGCTCTATCTCGTGGCCAGATGTACACAAGAAAGGGCAGCACTGATATACATGAGTTTGATGGGTTGTTTCTTGGGTTTAATGCGCACTATAAAGTTACATCAGTCATTGGGCATGTTTTCAGTGTAGATTTCCCAGAAAAATATCGAGATTGGTCAGCTACTGATCCTTTAGATCTTTTCCAATCTCCAATAAATAAGACGGAATCAAATCCAAAGGCTCACATTCGAAGGCATTTAAGTCAAGAAGCTCGTGGTTGTCTTATTGAATGTACGGGCTTTCGAGGCAATGAACTTGGGGGAAGGGTTCATCGTGCACGATTTTCTTCTGTTACTGAGAAAGATATTTTGACGGCTTTGGAAAACCTTGTTGAACCAAATAAAAATGAGGCACTGGCAGTGGATGCTCGGCAAGAAATAGATTTGAAAGTTGGAGTTGCTTTTACACGCTTTCAAACCATTTTTGATTCTTGCTTCAGCTATGGGCCATGTCAAACTCCTACCCTTGGGTTTTGTGTACAGCGTTATTTGCAAATTTCTACATTTAAACCTGAAAAGTTTTGGTCTGTGTGTCCTTACATAATTCAAAGTGGTTATGAGCTTCAACTTGAATGGGCACGCAACAGAATTTTTGACTCAGACGTTACTTCAATGTTTCAGAAAGTGGTAATGGAAGATGGGATTGTGGAAGTAACTGTCATATCAGAGAAACAAGAAAGCAAAAGTCGCCCTCATGGTCTTAATACTGTGAATCTTCTAAAGGTTGCTTCTAGTGCACTTGGATTTGGACCTCAAATGGCCATGCAGCTAGCTGAACGGTTATATACTCAAGGCTTCATAAGCTATCCCCGGACGGAAAGCACAGCTTATCCTTCTTCATTTGACTTCAAAGCCACACTACATGCTCAAACAAGCAATCCAGAATGGGGTGATTATGTAAGAATGCTATTATCTGATGGATACACTAAACCAAAATCAGGAACAGATGCAGGTGACCATCCTCCTATTACTCCAATGCGATCTGCCACGGAGGAGATGTTAGAGAAAGATGCTTGGAGACTTTATCAGTATATCTGTCAACACTTTATAGGGTCTCTGTCTCCGGACTGCAAGTATGTAAGGACAAAAGTGCAATTTTGTATAGGCGGAGAATCTTTCCACTGTACTGGGCTGCGTGTTAATAGCAGAGGATTCACGGCCATTATGCCATGGCTGGCAGTAACTGAGAGAAGCCTTCCTCTTTTTTCCAAAGGAGAGAAAATTGAAGTAACAAAAGTTGAGCTATATGAGGGAAATACCACGGCTCCTGATTATTTAACTGAGAGTGAGTTGATTTCCCTTATGGAGAAGCATGGAATAGGCACAGATGCATCAATATCAGTACATATAAACAACATATGCGAGCGAAATTATGTTCAGGTACAAGCTGGAAGAAAACTGGTTCCAACTGCATTAGGGATCACATTGGTAAGAGGATATCAGTGTATTGATCCAGATCTATGTTTGCCAAACATTCGGAGTTTCATTGAGCAACAAATCACCCTTGTTGCTAAGGGTCAGGCAGATCATTCCCGTGTCATACAGCATGTGCTACAACAATTCAAAGAGAAGTACAGTTATTTTGTCAAGCAGATTGAAAACATGGATGCTTTGTTTGAAGCTCAATTCTCTCCGCTTGCGGACTCAGGACGATCTCTCAGCAAGTGTGGAAAATGCTTACGATACATGAAGCACATTTCCACCCAACCGCAACGCCTATACTGTGGAACGTGCGAGGAAGTTTATTATCTTCCTCAAAAAGGAACAATTAAGCTTTACAAGGAACTTACTTGTCCTTTAGACAACTTTGAGCTTTTGATATTCTCCATGCCTGGTCCAGAAGGGAAGTCATTTCCTCTCTGCCCATACTGCTACAATAGTCCACCATTTGAAGGCATTGAAACATTCTTAGGCACCACAAATTCCGGCAAGATGGCAAAGGGTGCTGGAATGGCATGCGTCCAGTGCCTCCACCCAACTTGCCGGCATTCTCTAATCACTCAAGGTGTCTGTGCTTGTCCCGAATGTAGCGGGACACTTGTCCTCGACCCAGTGAGTGCTCCAAAATGGAGACTAAACTGCAACAAGTGCAATTTCCTTGTCTTTCTTCCTCCAGGTGCTCATAGAATCTCTACTACTGAGGAAAAATGCTCTGATTGTGATTCAACTATTCTTGAAGTGGACTTTAATAAGAAAACAACGCCTTTGGATAACGGAGCTACGCTTCATGTTGGCTGCATTCTTTGCGACGAGTTTCTTCATTCACTTCTTGAGATGAAACATAGCAAGTCATTTTTTAAGAGATTTGGCAACAGAGGACGAGGAAGGGGAGGAGGCTCAAGAGGAAGGGGGCGTGGCAATGGAAAGAAGCTGGATCCTAAAATGAGTTTTAGAGACTTCTAG 2502 42.29 FSLPRLFQVAEKPSIALSIATALSRGQMYTRKGSTDIHEFDGLFLGFNAHYKVTSVIGHVFSVDFPEKYRDWSATDPLDLFQSPINKTESNPKAHIRRHLSQEARGCLIECTGFRGNELGGRVHRARFSSVTEKDILTALENLVEPNKNEALAVDARQEIDLKVGVAFTRFQTIFDSCFSYGPCQTPTLGFCVQRYLQISTFKPEKFWSVCPYIIQSGYELQLEWARNRIFDSDVTSMFQKVVMEDGIVEVTVISEKQESKSRPHGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKATLHAQTSNPEWGDYVRMLLSDGYTKPKSGTDAGDHPPITPMRSATEEMLEKDAWRLYQYICQHFIGSLSPDCKYVRTKVQFCIGGESFHCTGLRVNSRGFTAIMPWLAVTERSLPLFSKGEKIEVTKVELYEGNTTAPDYLTESELISLMEKHGIGTDASISVHINNICERNYVQVQAGRKLVPTALGITLVRGYQCIDPDLCLPNIRSFIEQQITLVAKGQADHSRVIQHVLQQFKEKYSYFVKQIENMDALFEAQFSPLADSGRSLSKCGKCLRYMKHISTQPQRLYCGTCEEVYYLPQKGTIKLYKELTCPLDNFELLIFSMPGPEGKSFPLCPYCYNSPPFEGIETFLGTTNSGKMAKGAGMACVQCLHPTCRHSLITQGVCACPECSGTLVLDPVSAPKWRLNCNKCNFLVFLPPGAHRISTTEEKCSDCDSTILEVDFNKKTTPLDNGATLHVGCILCDEFLHSLLEMKHSKSFFKRFGNRGRGRGGGSRGRGRGNGKKLDPKMSFRDF 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50790500 50800859 + Bma024517.1 Bma06g01402 84904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01402 833 Gene3D - 2 111 - -
Bma06g01402 833 CDD TOPRIM_TopoIA_TopoIII 9 143 IPR034144 -
Bma06g01402 833 MobiDBLite consensus disorder prediction 818 833 - -
Bma06g01402 833 MobiDBLite consensus disorder prediction 803 833 - -
Bma06g01402 833 Gene3D Topoisomerase I, domain 3 203 456 IPR013825 -
Bma06g01402 833 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 816 IPR000380 GO:0003677|GO:0003917|GO:0006265
Bma06g01402 833 SMART topIaneu2 255 510 IPR003602 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 292 306 IPR023406 GO:0003917
Bma06g01402 833 Pfam DNA topoisomerase 146 548 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 SMART topIban2 122 209 IPR003601 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 CDD TOP1Ac 149 558 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 SUPERFAMILY Prokaryotic type I DNA topoisomerase 7 597 IPR023405 -
Bma06g01402 833 Gene3D Topoisomerase I, domain 4 263 388 IPR013826 -
Bma06g01402 833 PRINTS Prokaryotic DNA topoisomerase I signature 179 197 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 PRINTS Prokaryotic DNA topoisomerase I signature 472 486 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 PRINTS Prokaryotic DNA topoisomerase I signature 374 390 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 PRINTS Prokaryotic DNA topoisomerase I signature 297 306 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bma06g01402 833 Gene3D Topoisomerase I, domain 2 153 558 IPR013824 -
Bma06g01402 833 PANTHER DNA TOPOISOMERASE 3-BETA-1 5 816 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01402 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - csv:101216022 1353.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01402 Bma-Chr6:50790500 Bma15g00775 Bma-Chr15:16419280 1.98E-98 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1068 . . . . . . . . . . . Cma14g01522 . Car14g01348 . . Cpe03g01281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g01402 . . Cmo14g01558 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007510 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 5 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01402 Bma_Chr06 FPKM 0.460099 0.701352 1.073516 0.807501 5.85937 6.100056 6.406638 1.508973 1.506418 1.772417