Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01409 GAATTTGATCCGCTTACAAAGGTGATAGACACGTCCTCTTCCCAAGCAAGGAAAGGGCAGGACATTCAAGGCATTCCATGGGACAGATTGGATTTAACTCGTGAAAAGTATCGATTGACCAGACTTGAACAATATAAGAATTATGAGAACATTCCATCTTCCGGTGAAGCTGTAGAAAAGGAGTGTAAACCAATTGAAAAGGGTGGGAACTACTATGAGTTCTTTCACAATACAAGATTGGTAAAGCCTACTATACTTCATTTTCAGCTTAGAAACCTTATCTGGGCTACATCGAAACACGACGTCTATTTGATGTCCAACTACTCGGTTATGCACTGGTCATCCTTATCTAGTAATTTGACAGAAATACTCAATTTTGCTGGACGTGTTGCCCCTTCTGAGAAACATGCAGGAAGTTTACTGGAGGGTTTTACACAAACTCAGATTAGCACGCTTACAATCAAGGAAAATTTTCTCGTCGCAGGAGGATTCCAAGGAGAGCTTATTTGTAAGCGTATGGATAAAGGAGGAGTCAGTTTTTGTGCTCGCACGACATGTGATGATAATGCCATCACTAATGCCTTGGAAATATACGACAGCTTAGGGGGTGGAGTACATTTCATGGCGTCAAATAATGACTGTGGCATAAGAGAATATGACATGGAGAGGTTTCAGCGTTTGAATCACTTCCATTTTCCATGGCCAATAAATCATACATCAATGAGCCCAGATCGACGGCTTATCACTGTAGTTGGAGATCATGTAGATGGATTACTTGTTGATTCACAAAGAGGGAAGACTGTTGCCACAGTCATCGGTCATCGAGATTATTCTTTTGCATCTGCATGGCATCCTGATGGACGCACTTTTGTCACCGGGAACCAAGACAAGACATGTCGAGTTTGGGATGTAAGAAACTTATCATCACCCATTGCAATTCTCAAAGGCAATCTAGGAGCTTGCAGATCAATACGCTATTCATCAGACGGTCAATTTATGGTGGTAGCTGAGCCTGCAGATTTTGTGCACATTTACAGCACGAAAATGGATTATAATAAACGGCAAGAGATTGATTTCTTTGGCGAGATTTCCGGGATATCGTTGAGTCCAGATGACGAATCTTTGTATATAGGAGTATGGGACAGGACTTACGCAAGCTTGTTGCAATATAACAAAAGCATAGGTATGAATATCTCGATTCTTACTTTTGATTTTTTGAGAAAAGTAAGACATAAAAAAATGAATGGAAAACAAGGGTTTGATAATCTATTCTCCCTAGGAGTTGTTTGTTTTTGGGTCCAGTTTTTATGA 1311 40.35 EFDPLTKVIDTSSSQARKGQDIQGIPWDRLDLTREKYRLTRLEQYKNYENIPSSGEAVEKECKPIEKGGNYYEFFHNTRLVKPTILHFQLRNLIWATSKHDVYLMSNYSVMHWSSLSSNLTEILNFAGRVAPSEKHAGSLLEGFTQTQISTLTIKENFLVAGGFQGELICKRMDKGGVSFCARTTCDDNAITNALEIYDSLGGGVHFMASNNDCGIREYDMERFQRLNHFHFPWPINHTSMSPDRRLITVVGDHVDGLLVDSQRGKTVATVIGHRDYSFASAWHPDGRTFVTGNQDKTCRVWDVRNLSSPIAILKGNLGACRSIRYSSDGQFMVVAEPADFVHIYSTKMDYNKRQEIDFFGEISGISLSPDDESLYIGVWDRTYASLLQYNKSIGMNISILTFDFLRKVRHKKMNGKQGFDNLFSLGVVCFWVQFL 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50850261 50853996 + Bma024524.1 Bma06g01409 84911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01409 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 306 - -
Bma06g01409 436 Pfam WD domain, G-beta repeat 266 303 IPR001680 GO:0005515
Bma06g01409 436 SUPERFAMILY WD40 repeat-like 147 383 IPR036322 GO:0005515
Bma06g01409 436 Gene3D - 203 420 IPR015943 GO:0005515
Bma06g01409 436 PANTHER - 3 393 - -
Bma06g01409 436 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 3 393 - -
Bma06g01409 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 306 IPR001680 GO:0005515
Bma06g01409 436 SMART WD40_4 264 303 IPR001680 GO:0005515
Bma06g01409 436 SMART WD40_4 307 346 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01409 - - - zju:107422250 718.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g00994 Bma06g01409 CCT
Bma02g00997 Bma06g01409 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00997 Bma-Chr2:50599691 Bma06g01409 Bma-Chr6:50850261 0 dispersed
Bma05g01238 Bma-Chr5:51761696 Bma06g01409 Bma-Chr6:50850261 0 dispersed
Bma05g01402 Bma-Chr5:53415769 Bma06g01409 Bma-Chr6:50850261 2.50E-107 dispersed
Bma06g01409 Bma-Chr6:50850261 Bma14g00658 Bma-Chr14:7104284 0 dispersed
Bma02g00996 Bma-Chr2:50537402 Bma06g01409 Bma-Chr6:50850261 0 wgd
Bma04g00994 Bma-Chr4:16120005 Bma06g01409 Bma-Chr6:50850261 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1084 . . Bda03g01080 . Bpe04g00995 . Bma04g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0895 Cone11ag0609 . . . . Blo02g00418 Blo07g00077 . . . . Bma02g00997 Bma06g01409 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01409 Bma_Chr06 FPKM 0.0 0.0 0.111522 0.0 0.0 0.248149 0.22134 1.122445 0.685425 0.68963