Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma06g01411 | ATGGGAAGGTCTTTTCTTCAAGTTGCTGCTACAGAGGAGGTTGCTCCCCCTCTCAGAGTGGTTCAGATTGAAGGATTGGTAATCTTAAAGATAATCAAACACTGCAAAGAGTTTTCACCAGCTGTCGTCACAGGGCAACTTCTCGGATTAGATGTTGGTAGCATTCTAGAAGTTACTAACTACTTCCCTTTCCCGATTCGAGAAGAAGACGAGGAGATTGAAGCAGAGGGTGCTAATTATCAGCTCGACATGATGAGATGTTTGAGAGATGTCAATGTTGACAATAACACCGTTGGATGGTACCAATCTACCTTCTTAGGTTCCTATCAAACATCAGAATTGATCGAAACCTTTATGAATTACCAGGAAAGTATTAGACGGTGTGTGTGCATAATTTATGATCCATCGCGATCCAATCAGGGTGTCTTAGCTCTCAAGGCATTGAAGCTTTCTGATTCTTTTATGGAGCTTTACAGAAGTAAAAATTTTACAGGAGAGAAATTGAGGGAGAACAACTTATCTTGGGTGGATATATTTGAAGAAATACCTATTAAAGTTTTGAATTCTGCCCTTATCAGTGCTTTTATGTCAGATCTGGAAGCAGATACCCCTGTCACTCAGGTAATAACGATATATTTCTGTAGACTGTTGGAGTTCATATGTTTCATGAATTTACTCTGTTTTCTTTTTCAGTGTGACTATGATCGGCTGCAACTTTCTACGAAACCCTTTGTGGAAAGGAATATTGAATTTCTGATTGAATGTATGGATGATTTGTCATTGGAACAGCAAAAGTTCCAATTCTATAATCGAAATCTGTCGCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAAAGAAGAACTGAGAACATGGCGCGAAAAGCAGCTGGTGAAGAACCTTTACCAGAGGAGGATCCTTCAAATCCAATCTTTAAGCCTGTTGCCGAGCCATCGCGGCTGGATAGCTTCCTCATAACAAATCAAATTGGAAACTACTGTAACCAAATAAATGGGGTTGCTGGACAGAGCTTTAGCAGATTGTACTTGATGAAAGCATTGCACGACAACAGTTCATAA | 1080 | 40.28 | MGRSFLQVAATEEVAPPLRVVQIEGLVILKIIKHCKEFSPAVVTGQLLGLDVGSILEVTNYFPFPIREEDEEIEAEGANYQLDMMRCLRDVNVDNNTVGWYQSTFLGSYQTSELIETFMNYQESIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSKNFTGEKLRENNLSWVDIFEEIPIKVLNSALISAFMSDLEADTPVTQVITIYFCRLLEFICFMNLLCFLFQCDYDRLQLSTKPFVERNIEFLIECMDDLSLEQQKFQFYNRNLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPVAEPSRLDSFLITNQIGNYCNQINGVAGQSFSRLYLMKALHDNSS | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 50859574 | 50863332 | - | Bma024526.1 | Bma06g01411 | 84913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma06g01411 | 359 | Pfam | C-terminal region of eIF3h | 234 | 357 | IPR045810 | - | |
Bma06g01411 | 359 | Pfam | C-terminal region of eIF3h | 139 | 206 | IPR045810 | - | |
Bma06g01411 | 359 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 237 | 357 | - | - | |
Bma06g01411 | 359 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 1 | 211 | - | - | |
Bma06g01411 | 359 | ProSiteProfiles | MPN domain profile. | 21 | 154 | IPR037518 | - | |
Bma06g01411 | 359 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 19 | 123 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Bma06g01411 | 359 | Gene3D | Cytidine Deaminase, domain 2 | 3 | 211 | - | - | |
Bma06g01411 | 359 | SMART | pad1_6 | 20 | 153 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Bma06g01411 | 359 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H | 237 | 357 | - | - | |
Bma06g01411 | 359 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H | 1 | 211 | - | - | |
Bma06g01411 | 359 | Hamap | Eukaryotic translation initiation factor 3 subunit H [EIF3H]. | 16 | 357 | IPR027524 | GO:0003743|GO:0005737|GO:0005852 | |
Bma06g01411 | 359 | CDD | MPN_eIF3h | 19 | 306 | IPR027524 | GO:0003743|GO:0005737|GO:0005852 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g01411 | Bma-Chr6:50859574 | Bma04g00175 | Bma-Chr4:1466617 | 1.15E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma06g01411 | K03247 | - | twl:120014291 | 568.54 |