Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01411 ATGGGAAGGTCTTTTCTTCAAGTTGCTGCTACAGAGGAGGTTGCTCCCCCTCTCAGAGTGGTTCAGATTGAAGGATTGGTAATCTTAAAGATAATCAAACACTGCAAAGAGTTTTCACCAGCTGTCGTCACAGGGCAACTTCTCGGATTAGATGTTGGTAGCATTCTAGAAGTTACTAACTACTTCCCTTTCCCGATTCGAGAAGAAGACGAGGAGATTGAAGCAGAGGGTGCTAATTATCAGCTCGACATGATGAGATGTTTGAGAGATGTCAATGTTGACAATAACACCGTTGGATGGTACCAATCTACCTTCTTAGGTTCCTATCAAACATCAGAATTGATCGAAACCTTTATGAATTACCAGGAAAGTATTAGACGGTGTGTGTGCATAATTTATGATCCATCGCGATCCAATCAGGGTGTCTTAGCTCTCAAGGCATTGAAGCTTTCTGATTCTTTTATGGAGCTTTACAGAAGTAAAAATTTTACAGGAGAGAAATTGAGGGAGAACAACTTATCTTGGGTGGATATATTTGAAGAAATACCTATTAAAGTTTTGAATTCTGCCCTTATCAGTGCTTTTATGTCAGATCTGGAAGCAGATACCCCTGTCACTCAGGTAATAACGATATATTTCTGTAGACTGTTGGAGTTCATATGTTTCATGAATTTACTCTGTTTTCTTTTTCAGTGTGACTATGATCGGCTGCAACTTTCTACGAAACCCTTTGTGGAAAGGAATATTGAATTTCTGATTGAATGTATGGATGATTTGTCATTGGAACAGCAAAAGTTCCAATTCTATAATCGAAATCTGTCGCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAAAGAAGAACTGAGAACATGGCGCGAAAAGCAGCTGGTGAAGAACCTTTACCAGAGGAGGATCCTTCAAATCCAATCTTTAAGCCTGTTGCCGAGCCATCGCGGCTGGATAGCTTCCTCATAACAAATCAAATTGGAAACTACTGTAACCAAATAAATGGGGTTGCTGGACAGAGCTTTAGCAGATTGTACTTGATGAAAGCATTGCACGACAACAGTTCATAA 1080 40.28 MGRSFLQVAATEEVAPPLRVVQIEGLVILKIIKHCKEFSPAVVTGQLLGLDVGSILEVTNYFPFPIREEDEEIEAEGANYQLDMMRCLRDVNVDNNTVGWYQSTFLGSYQTSELIETFMNYQESIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSKNFTGEKLRENNLSWVDIFEEIPIKVLNSALISAFMSDLEADTPVTQVITIYFCRLLEFICFMNLLCFLFQCDYDRLQLSTKPFVERNIEFLIECMDDLSLEQQKFQFYNRNLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPVAEPSRLDSFLITNQIGNYCNQINGVAGQSFSRLYLMKALHDNSS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50859574 50863332 - Bma024526.1 Bma06g01411 84913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01411 359 Pfam C-terminal region of eIF3h 234 357 IPR045810 -
Bma06g01411 359 Pfam C-terminal region of eIF3h 139 206 IPR045810 -
Bma06g01411 359 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 237 357 - -
Bma06g01411 359 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 1 211 - -
Bma06g01411 359 ProSiteProfiles MPN domain profile. 21 154 IPR037518 -
Bma06g01411 359 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 19 123 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma06g01411 359 Gene3D Cytidine Deaminase, domain 2 3 211 - -
Bma06g01411 359 SMART pad1_6 20 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma06g01411 359 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 237 357 - -
Bma06g01411 359 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 1 211 - -
Bma06g01411 359 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 16 357 IPR027524 GO:0003743|GO:0005737|GO:0005852
Bma06g01411 359 CDD MPN_eIF3h 19 306 IPR027524 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01411 Bma-Chr6:50859574 Bma04g00175 Bma-Chr4:1466617 1.15E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01411 K03247 - twl:120014291 568.54