Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01412 ATGGCGGCTGCTACTCTTGTAGTCTCCTCCTTCGGCTCTATCTGCTTCCGCCGTAGTCAGAATTTTAATGGCCGGAAACACGATCTGCGTCGCGCTCACGGTCCGGTCTCAGCGTCTGTCTTCCCTCTCCTCAGACCTAACCGTTCGAGGCTCGGATCCTTTTATTTTTATTCATGTTCTTCCCTGTATCCGAGCAAGTCTTTGGCATCTGCTTCTCTCGGAGATAGTGAGACCGGGAGTTCTACCTCCGTCTCCAACGGCGAGCCATTAGGAGAGGATTCTGCTGCGTTTGATCTTTCGGAGCAGAAGGTCTCTTCCTGGATTTATTTTTGTGTAATTCTCGGCGTTGTTCTCGTTGTGCTTAACCTTGTTTGGATTGATAACTCTACTGGTTTTGGCAAGGCACTTGTTGACGCTGTTTCTGGAATTTCTGATAGTCACGAGGTTGCAATGTTGATCCTAATTTTAATCTTTGCTACTGCACACAGTGGTTTGGCTAGTCTCAGAGATATTGGTGAGAAACTGATCGGAGAACGGGCTTACCGTGTTTTGTTTGCAGGAATTTCTTTACCATTGGCTGTTAGCACTGTCGTAAGTTCCTGTTACTCTAAAAATCTGGAAGAAATTTCAGTTTGTATTCAGGTGTACTTTATTAACCACAGATATGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCTGGTGTTCATCAAGCCATGTGGCTTAGTTCATTTATTTCGTTTTTCTTCCTCTACCCTTCTACCTTTAATCTATTAGAGGTAGCTGCGGTTGACAAACCAAAAATGCATCTTTGGGAAACTGGGATCATGAGAATCACCCGGCATCCGCAGATGGTAGGACAGGTAATCTGGTGTCTAGCTCACACAGTTTGGATTGGGAGCTCTGTCGCAGCGGTAGCTTCCCTCGGCCTGATTGGACATCATCTATTTGGTGTTTGGAATGGAGATAGAAGGTTGTCTAAACGATATGGGGAGGACTTCGAAGCCGTGAAGAGTCGAACCAGCATAATTCCATTTGCAGCCATCCTCGATGGTCGTCAAAATTTACCAAGCGATTACTACAAGGAATTTATTCGACTTCCATATCTGACAATCACTGCATTGACCTTAGGTGTGTATTTGGCGCACCCACTTATGCAGGCGGCTAGTTTCCGGCTTCATTGGTGA 1188 45.79 MAAATLVVSSFGSICFRRSQNFNGRKHDLRRAHGPVSASVFPLLRPNRSRLGSFYFYSCSSLYPSKSLASASLGDSETGSSTSVSNGEPLGEDSAAFDLSEQKVSSWIYFCVILGVVLVVLNLVWIDNSTGFGKALVDAVSGISDSHEVAMLILILIFATAHSGLASLRDIGEKLIGERAYRVLFAGISLPLAVSTVVSSCYSKNLEEISVCIQVYFINHRYDGVQLWQLQSVPGVHQAMWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQVIWCLAHTVWIGSSVAAVASLGLIGHHLFGVWNGDRRLSKRYGEDFEAVKSRTSIIPFAAILDGRQNLPSDYYKEFIRLPYLTITALTLGVYLAHPLMQAASFRLHW 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50864786 50867575 + Bma024527.1 Bma06g01412 84914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01412 395 Pfam NnrU protein 151 386 IPR009915 -
Bma06g01412 395 Gene3D - 147 346 - -
Bma06g01412 395 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 71 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01412 K15744 Z-ISO; zeta-carotene isomerase [EC:5.2.1.12] - csv:101211624 510.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00995 Bma06g01412 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00995 Bma-Chr2:50529093 Bma06g01412 Bma-Chr6:50864786 1.86E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0883 . . . . . Blo02g00422 Blo07g00080 . . . Bpe13g00744 Bma02g00995 Bma06g01412 . . . . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011013 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01412 Bma_Chr06 FPKM 8.260841 10.483662 8.430778 8.926908 9.554697 9.070923 9.798198 11.636955 13.973397 12.504185