Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01415 ATGTATCCCAAACGATCCAGTCAAGGAGATGGGTCTGTTTCCATACCGGTTCGGACTAGTGACAGACTTAGAAGAAGGCCAAACGTGTATGGTCGTGGCAGTACATATATATATTACGAAAAAAGCATCAGGCACACCAAGAAAAGGAAGACAAAAACACCAGCTTCCAGAATCGCCAAATTGATGAGTTCTGGGGGTCAACCAATGCGGAATTTAGATGATCATTTAGGAGATACCAATCTTCGCCGTTCTACAAGACAGAGGAGGATACCTGCAAATTATGCAAGTTTTACAGATAGTTCTGGTTCGGAAGATGAAGATTTAATGAGACCTGCCTATCCAAAGCTGAGGAAACAAATCAATAACAACATTGTGCGAGACGGTTTGGCTTCTCCAAAGCATAAAAATACATTGGATAATAATAGATGCACTCCTCGACGAGAAGGACTTCGACCTCGTCGTTCAAAAATGGTAGTTGGGGAACAACTGAGTTTGGAATCTGACGGTGAGCAAGATACTTCAGAAGAGAAGGTTGACCAAGATGAAACTGAAAATGTGAATGATATGGAGGATAATGATGGAGATGATGGTCAAAATGAAGAAGAATGCGAGGATGAGGATGAGGATGAGGACGAAGCAGATGGTGATGATGAAGATGGTGAAGAGCAAGAGGAGGGAAGGAGACGATATGATCTTCGTAATCGTGCAGAAGTGCGCAGGCTATCTATGGAAGAAGGTAAGGGAAGACCAAGGTCTCCTCGCAGGGTTTTGCATCAAGGAATGGGATTGAAAGTTGGCAGAGAAATTCGTAAGGGTGGATCAAGAGTTCATAAGCGTCATCGTCTACAAAGGGTTGAAGATTCTGATGATTCTCTTTTAGTGGATGAGCTAGACCAAGCTCCTTCCATTCCATGGGGGCGAAGCGGGAGCAGATCTGGACCACCTTGGCTCTTTGGGGGATTAGATATTCAAGGTACAACTGCATGGGGATTGAATATTGCTGCTTCTGGTTGGGGTCATCAGAGTGATGCTTTCTCTTCCCTGACTTCTGGAATTCAAACTGCTGGTCCAAGTTCGAAAGGAGGGGCAGATATCCAACCATTACAGGTTGATGAAAGTGTCAGTTTCAATGACATAGGTGGTCTTTCTGAATACATTGATGCTTTAAAAGAAATGGTATTCTTTCCCCTCTTGTATCCTGATTTCTTTTCAAGTTATCACATCACCCCTCCAAGAGGGGTATTATTATGCGGTCCTCCCGGCACAGGGAAAACACTTATTGCGAGGGCTCTTGCGTGTGCTGCTTCCAAGGCTGGCCAGAAGGTCAGTTTTTACATGCGTAAGGGTGCTGATGTTCTTAGTAAATGGGTTGGTGAGGCTGAAAGACAATTGAAACTATTATTTGAGGAAGCGCAAAAGAATCAGCCTTCCATCATATTTTTTGATGAAATTGATGGACTTGCTCCAGTAAGGTCCAGCAAACAAGAGCAAATTCACAATTCTATAGTTTCTACTTTACTAGCGTTGATGGATGGTCTTGACTCTCGTGGACAAGTAGTATTAATTGGTGCTACCAATCGAATTGATGCTATTGATGGAGCTTTACGTCGTCCTGGTCGCTTTGATCGTGAATTTAACTTTCCTTTGCCTGGTTGTGATGCACGTGCTGAAATATTAGACATTCATACACGAAAATGGAAACATTCTCCTTCAAAGGACCTTAGACTAGAACTTGCAGCTACATGTGTAGGATATTGCGGTGCTGATTTGAAAGCATTATGCACTGAAGCTGCAATTCGTGCATTTCGTGAAAAATATCCTCAAGTTTATACGAGTGATGACAAATTTCTGATAGACGTTGATTCTGTGAAGGTTGAAAAGTATCATTTTGTTGAAGCCATGTCGACAATAACTCCTGCTGCACATAGAGGCACTGTTGTTCATTCCAGACCTCTGTCTTTGGTTGTTGCACCATGTTTAAAATCCCATCTCCAGAAAACCATGAATTTTATATTTGATGTATTTCCTCCTGTTGGGATGTCTTCAGAATTAGCAAAACTCTCTTTCCTTTCATATGGTTCAGCAATTCCTCTGGTGTACAGGCCTCGTCTTCTCCTCTGTGGAAGTGAAAGTGTTGGGCTGGATCATCTTGGACCTGCTGTTTTACATGAATTGGAGAAGTTTCCCGTTCATTCATTAGGACTCCCGTCGTTGCTTTCGGATCCTAGTGCAAAGACTCCTGAGGAAGCCTTGGTACACATATTTGGTGAAGCAAGAAGGACAACGCCATCAATACTGTACTTACCTCAGTTCCACCATTGGTGGGAGACTGCAGATGAACAACTCAGGGCAGTTCTACTTTCATTATTAGAAGAACTACCATCTGATCTACCAATATTATTGCTCGGAACATCTTCTTCTACACTTGTTGAAATTGATGAGAAAGCTTCTTTTGTATTTCCTCGTAGTTGCATCTATAAAGTCGATCCACCATCTAAAGAAGACAGGTCCCTGTTTTTTGATAGTTTAATTGAAGCTGCTTTTTCAGTCTTGGTGGAGGGCATGTCAAAAAACTCCCAAGAGTCAACGTCCCTTCCTCAACTTCCTAAGGCTCCTAAAGTAGAAAGTGGTCCAAAGGCCTCTGAGTTAAGAGCTAAGGTAGAAGCTGAACAGCATGCCCTTCGCCGAATGCGGATGTGTCTCAGAGATGTTTGCAACAGGATTTTGTATGATAAACGATTTAGTGTATTCCATTATCCAGTCTTAGATGAAGATGCTCCAAACTATCGCTTGGTTATTCAAAATCCCATGGATGTTGCTACTTTACTGCAGCGAGTTGACTCCGGGCTATACATTACATCATCAGCATTCATGCAAGATGTAGATCTTATTGTTTCTAATGCAAAGGCTTATAATGGAGATGATTACAACGGTGCTAGGATCGTCAGTAGAGCTTATGAGCTTCGAGATGCAGTGCAAGGAATGCTGTCACAGATGGATCCTGGGCTAGTCACAATCTGCGACAAGATTGTTGTTCAAGGAGGTCCTTTGCCCATTCCTACTGATTTAGTGGGATCACCTTTCACATTAGCTCCAGTTGCGCAGCTTGGTACTGTAACAAGGGCGAGTGCACGTCTTCGTAATGTTCAACCAGAAGTTAATATGGGTCAAAGCTATGAGGCACTGAAACGACCTAAGAAGAATGTTGATTCTGCACATCATGCAGGTATAATAAGCTGCGGAATCAAGACTCACCACCAAAGGCAACTCAAGAACCTGAGACCAATGAAGCAAATCCAGCAACGGCCGAACCCTGAACCGGAACCCATTTTGGTCGACGATAATAACAACTCAACCTGCAGAGAGGCTCCTGATCTTGCTGATGCAAATGGGTCCCATGATTTGATGATGTTAGATGGTGATATTTCTGGCCAGATTGAATCCAGGCACAAGAAGGATGACATGAAGCCTTCGATTTTGAAGTTTTTGTTTAAATTTGCAGAGGATGAAAGAAATTTCTGA 3522 42.79 MYPKRSSQGDGSVSIPVRTSDRLRRRPNVYGRGSTYIYYEKSIRHTKKRKTKTPASRIAKLMSSGGQPMRNLDDHLGDTNLRRSTRQRRIPANYASFTDSSGSEDEDLMRPAYPKLRKQINNNIVRDGLASPKHKNTLDNNRCTPRREGLRPRRSKMVVGEQLSLESDGEQDTSEEKVDQDETENVNDMEDNDGDDGQNEEECEDEDEDEDEADGDDEDGEEQEEGRRRYDLRNRAEVRRLSMEEGKGRPRSPRRVLHQGMGLKVGREIRKGGSRVHKRHRLQRVEDSDDSLLVDELDQAPSIPWGRSGSRSGPPWLFGGLDIQGTTAWGLNIAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPLQVDESVSFNDIGGLSEYIDALKEMVFFPLLYPDFFSSYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQKNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILDIHTRKWKHSPSKDLRLELAATCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFVEAMSTITPAAHRGTVVHSRPLSLVVAPCLKSHLQKTMNFIFDVFPPVGMSSELAKLSFLSYGSAIPLVYRPRLLLCGSESVGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHHWWETADEQLRAVLLSLLEELPSDLPILLLGTSSSTLVEIDEKASFVFPRSCIYKVDPPSKEDRSLFFDSLIEAAFSVLVEGMSKNSQESTSLPQLPKAPKVESGPKASELRAKVEAEQHALRRMRMCLRDVCNRILYDKRFSVFHYPVLDEDAPNYRLVIQNPMDVATLLQRVDSGLYITSSAFMQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVQGMLSQMDPGLVTICDKIVVQGGPLPIPTDLVGSPFTLAPVAQLGTVTRASARLRNVQPEVNMGQSYEALKRPKKNVDSAHHAGIISCGIKTHHQRQLKNLRPMKQIQQRPNPEPEPILVDDNNNSTCREAPDLADANGSHDLMMLDGDISGQIESRHKKDDMKPSILKFLFKFAEDERNF 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50898979 50906947 + Bma024530.1 Bma06g01415 84917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01415 1173 PRINTS Bromodomain signature 942 960 IPR001487 GO:0005515
Bma06g01415 1173 PRINTS Bromodomain signature 926 942 IPR001487 GO:0005515
Bma06g01415 1173 PRINTS Bromodomain signature 960 979 IPR001487 GO:0005515
Bma06g01415 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 638 IPR027417 -
Bma06g01415 1173 MobiDBLite consensus disorder prediction 168 221 - -
Bma06g01415 1173 MobiDBLite consensus disorder prediction 1 28 - -
Bma06g01415 1173 MobiDBLite consensus disorder prediction 860 882 - -
Bma06g01415 1173 MobiDBLite consensus disorder prediction 86 102 - -
Bma06g01415 1173 CDD AAA 410 549 - -
Bma06g01415 1173 PANTHER AAA DOMAIN-CONTAINING 1 1073 IPR045199 -
Bma06g01415 1173 SUPERFAMILY Bromodomain 883 1004 IPR036427 GO:0005515
Bma06g01415 1173 MobiDBLite consensus disorder prediction 125 232 - -
Bma06g01415 1173 CDD Bromo_AAA 894 1004 - -
Bma06g01415 1173 ProSiteProfiles Bromodomain profile. 917 979 IPR001487 GO:0005515
Bma06g01415 1173 MobiDBLite consensus disorder prediction 1 15 - -
Bma06g01415 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 911 IPR027417 -
Bma06g01415 1173 ProSitePatterns AAA-protein family signature. 519 537 IPR003960 GO:0005524|GO:0016887
Bma06g01415 1173 Gene3D - 550 635 - -
Bma06g01415 1173 Pfam Bromodomain 906 975 IPR001487 GO:0005515
Bma06g01415 1173 MobiDBLite consensus disorder prediction 139 155 - -
Bma06g01415 1173 SMART bromo_6 894 1001 IPR001487 GO:0005515
Bma06g01415 1173 Gene3D - 886 1012 IPR036427 GO:0005515
Bma06g01415 1173 MobiDBLite consensus disorder prediction 82 108 - -
Bma06g01415 1173 SMART AAA_5 410 551 IPR003593 -
Bma06g01415 1173 PANTHER BNAC08G44480D PROTEIN 1 1073 - -
Bma06g01415 1173 Gene3D - 372 642 IPR027417 -
Bma06g01415 1173 Pfam AAA+ lid domain 577 613 IPR041569 -
Bma06g01415 1173 Pfam ATPase family associated with various cellular activities (AAA) 414 549 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01415 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - tcc:18602557 1657.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01415 Bma-Chr6:50898979 Bma13g00940 Bma-Chr13:39949208 1.25E-77 dispersed
Bma06g01415 Bma-Chr6:50898979 Bma07g00158 Bma-Chr7:2189370 1.02E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01415 Bma_Chr06 FPKM 1.208003 1.191362 0.091465 0.23596 2.891016 3.162077 2.17304 0.0 0.0 0.0