Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01418 ATGAGGTCTTCCGAAGATGCACCAGTTGACACCATGGGATGTGAAAAGGCAGGCTGCACACTTCCTCCCAAGGAAAGAAGATTTGCTGTCTTGGCATCTTCCCTTCTATCAAGCCAAACTAAGGATAATATTTTGTTCACAAATTTGGCAGGAGCTATTCAGAGACTAAATGAAAGCAATCTGCTTAATGCTGACGCCATTGACAAAGCAGATGAAGCTACCATCAAAACCTTGATTTATCCAGTAGGATTTTACACTAGAAAAGCTAGTAATTTGAAGAAAATTGCAAAAATATGTCTCACAAAGTATAACGGAGACATACCGTCGACGTTGGAGGAGCTACTTCTACTTCCCGGAATAGGTCCTAAGATGGCTCATTTGGTCATGAATGCTGGATGGAACAATGTTCAGGGGATATGTGTCGATACACATGTGCATCGTATATGCAATCGTCTTGGATGGGTGTCACGGAGGGGAAAGAAAGAGAAAACATCAACTCCAGAGGAAACAAGAAAGGCATTGGAGTTGTGGCTTCCAAAGGAAGAATGGATCCCAATCAATCCTCTTTTGGTGGGATTTGGACAGACTATATGTACTCCCCTTAGACCTCGGTGCGGACTGTGCAGTGTTAGTGACTTCTGCCCTTCTGCGTTTAAGGAGACTTCGAGTCCATCGTCGAAACCAAAACGATCAGCTCGAGTTCAAGATCCCTAA 714 43.7 MRSSEDAPVDTMGCEKAGCTLPPKERRFAVLASSLLSSQTKDNILFTNLAGAIQRLNESNLLNADAIDKADEATIKTLIYPVGFYTRKASNLKKIAKICLTKYNGDIPSTLEELLLLPGIGPKMAHLVMNAGWNNVQGICVDTHVHRICNRLGWVSRRGKKEKTSTPEETRKALELWLPKEEWIPINPLLVGFGQTICTPLRPRCGLCSVSDFCPSAFKETSSPSSKPKRSARVQDP 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50925791 50932951 - Bma024533.1 Bma06g01418 84920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01418 237 PIRSF Nth 16 223 - -
Bma06g01418 237 Pfam Helix-hairpin-helix motif 102 130 IPR000445 GO:0003677
Bma06g01418 237 Gene3D - 129 220 IPR023170 -
Bma06g01418 237 Hamap Endonuclease III-like protein 1 [NTHL1]. 1 220 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Bma06g01418 237 SMART ccc3 197 217 IPR003651 GO:0051539
Bma06g01418 237 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 198 214 IPR004035 -
Bma06g01418 237 MobiDBLite consensus disorder prediction 217 237 - -
Bma06g01418 237 SUPERFAMILY DNA-glycosylase 20 222 IPR011257 GO:0003824|GO:0006281
Bma06g01418 237 ProSitePatterns Endonuclease III family signature. 105 134 IPR004036 -
Bma06g01418 237 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 1 231 - -
Bma06g01418 237 Pfam HhH-GPD superfamily base excision DNA repair protein 33 175 IPR003265 GO:0006284
Bma06g01418 237 CDD ENDO3c 28 194 IPR003265 GO:0006284
Bma06g01418 237 Gene3D Hypothetical protein; domain 2 21 128 - -
Bma06g01418 237 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 1 231 - -
Bma06g01418 237 SMART endo3end 36 196 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01418 K10773 NTH; endonuclease III [EC:4.2.99.18] - qsu:111996257 385.956
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32