Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01421 ATGGAGAGACACAGCCAAGTAGAGAGAGATTGCAGGGTAAGGAAGCCGGAGATGGCTGGATACTATTACGACGAATCGGAATCATGGCTTTCTGACTACCCAGAAGATGTGAATTCGGAAAATTCAACTGAGTTTGGCTCGGAATTTGATATATGGTCGAGAATGGAGAGCGAATCGACGGCGACGACGAAGAGGAAGAAGAACCAGGTTCTTCTAGAAGGTTATGTCGAGGCTGCAGACGAGGATAATTTAACCAGAACGAAGAGCTTGACCGATGAAGATCTGGATGAACTCAAAGGCTGCTTAGATCTGGGATTTGGGTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGCTAGAGCTCTGTTATTCGATGAGTCAGAAGTTTATCGATGACCACCAGAAGTCGCCGGAGAATTCTCCGTCTGCGCCGTCAGATTCATGCTCCACCACTTCCAGCCCTATTGCGAATTGGAAAATCTCCAGCCCCGGTGACCATCCAGAAGACGTAAAAGCAAGGCTCAAATATTGGGCTCAGGCGGTGGCTTGTACAGTGAGATTATGCAGCTGA 582 48.8 MERHSQVERDCRVRKPEMAGYYYDESESWLSDYPEDVNSENSTEFGSEFDIWSRMESESTATTKRKKNQVLLEGYVEAADEDNLTRTKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFIDDHQKSPENSPSAPSDSCSTTSSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50955939 50956611 + Bma024536.1 Bma06g01421 84923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01421 193 Pfam Protein of unknown function (DUF1685) 90 145 IPR012881 -
Bma06g01421 193 PANTHER OSJNBA0071G03.3 PROTEIN 39 193 - -
Bma06g01421 193 MobiDBLite consensus disorder prediction 136 168 - -
Bma06g01421 193 PANTHER EXPRESSED PROTEIN 39 193 - -
Bma06g01421 193 MobiDBLite consensus disorder prediction 140 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01421 - - - jre:108980121 257.684
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01421 Bma-Chr6:50955939 Bma13g00444 Bma-Chr13:8242455 7.75E-29 dispersed
Bma01g01464 Bma-Chr1:26784589 Bma06g01421 Bma-Chr6:50955939 6.52E-08 transposed
Bma11g00976 Bma-Chr11:44039726 Bma06g01421 Bma-Chr6:50955939 3.71E-11 transposed
Bma15g00277 Bma-Chr15:2721006 Bma06g01421 Bma-Chr6:50955939 1.61E-14 transposed
Bma02g00990 Bma-Chr2:50435144 Bma06g01421 Bma-Chr6:50955939 6.73E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1193 . . . . . . . . . . Cma06g01664 . Car06g01406 Car14g01297 . Cpe08g00077 Cpe03g01232 . . . . . . . . . . . . . . Cone14ag0576 . . Cone11ag0614 . . . Cme07g01904 . Blo07g00090 . . . . . Bma06g01421 . Cmo06g01658 . . . Car08g00063 . . Cpe17g00989 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001176 2 2 2 2 2 2 5 2 2 2 1 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01421 Bma_Chr06 FPKM 10.340603 10.659043 20.309792 19.115763 9.64622 8.875769 10.485148 19.690329 16.74069 19.672655