Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01422 ATGAATTTCTTGAAGGAAACCACCAACTGGCTCGCTCTTTTCCTTCTGGGTGTCGCCATTTTGTTCTACTTTTACAAAACGAATCAACGGCCGCGCTATTTTGCTTCAAATATGGCCGGAGAAACTCCCAAATCAGTGTATGATTTTACTGTAAAGGATATTCATGGGAGTGATGTAAGTTTGAGTCAATACAGAGGGAAAGTTGTTCTGATTCTGAATGTTGCTTCACAGTGTGGTTTTACGCAATCAAACTACAAGGAACTAAATGTCTTGTACGAAAAATACAAAGATCAAGGTTTTGAGATATTGGCATTTCCTTGCAATCAGTTTGGACGACAAGAGCCAGGAAGCAATGAGGAAATCAAGGATACTGTTTGCACAATGTTTAAAGCAGAGTTCCCTATATTTGGCAAGATCGACGTGAACGGGAAGAACGCAGCACCGATTTACCAGTATCTAAAATCACAGAAAGGGGGATATTTCGGAGATAGTATTAAGTGGAACTTCACAAAGTTTTTGGTAAACAAAGAAGGGAAAGTTGTAAAAAGATACTCACCAACCACTTCCCCTTTTCAAATCGAGAAAGATATCTCGAACTTATTGGAATCTAAATGA 615 38.86 MNFLKETTNWLALFLLGVAILFYFYKTNQRPRYFASNMAGETPKSVYDFTVKDIHGSDVSLSQYRGKVVLILNVASQCGFTQSNYKELNVLYEKYKDQGFEILAFPCNQFGRQEPGSNEEIKDTVCTMFKAEFPIFGKIDVNGKNAAPIYQYLKSQKGGYFGDSIKWNFTKFLVNKEGKVVKRYSPTTSPFQIEKDISNLLESK 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50958728 50960721 - Bma024537.1 Bma06g01422 84924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01422 204 Gene3D Glutaredoxin 37 204 - -
Bma06g01422 204 PRINTS Glutathione peroxidase family signature 64 81 IPR000889 GO:0004602|GO:0006979
Bma06g01422 204 PRINTS Glutathione peroxidase family signature 100 116 IPR000889 GO:0004602|GO:0006979
Bma06g01422 204 PRINTS Glutathione peroxidase family signature 165 174 IPR000889 GO:0004602|GO:0006979
Bma06g01422 204 ProSiteProfiles Thioredoxin domain profile. 40 202 IPR013766 -
Bma06g01422 204 PIRSF Glutathion_perox 21 204 IPR000889 GO:0004602|GO:0006979
Bma06g01422 204 SUPERFAMILY Thioredoxin-like 45 202 IPR036249 -
Bma06g01422 204 CDD GSH_Peroxidase 45 197 IPR000889 GO:0004602|GO:0006979
Bma06g01422 204 ProSitePatterns Glutathione peroxidases active site. 66 81 IPR029759 -
Bma06g01422 204 Pfam Glutathione peroxidase 46 154 IPR000889 GO:0004602|GO:0006979
Bma06g01422 204 ProSiteProfiles Glutathione peroxidase profile. 36 204 IPR000889 GO:0004602|GO:0006979
Bma06g01422 204 ProSitePatterns Glutathione peroxidases signature 2. 103 110 IPR029760 -
Bma06g01422 204 PANTHER GLUTATHIONE PEROXIDASE 36 203 - -
Bma06g01422 204 PANTHER GLUTATHIONE PEROXIDASE 36 203 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01422 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - rcu:8264294 300.441
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00099 Bma-Chr4:797781 Bma06g01422 Bma-Chr6:50958728 7.71E-85 dispersed
Bma06g01422 Bma-Chr6:50958728 Bma07g01647 Bma-Chr7:52071609 3.90E-83 dispersed
Bma02g00987 Bma-Chr2:50314823 Bma06g01422 Bma-Chr6:50958728 1.91E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1191 . . . . . Bpe14g01042 . . . . Cma06g01662 . Car06g01405 . . . . . . . . . . . . . . . . . . Cone14ag0577 . . . . . . Cme07g01902 . Blo07g00091 Bda11g00464 . . Bpe13g00735 . Bma06g01422 . Cmo06g01657 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01422 Bma_Chr06 FPKM 1.163532 1.023853 3.106401 3.24043 1.664247 0.8474 1.182139 0.109322 0.369487 0.345127