Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01423 ATGGACGAGGTCTGCGAAGGAAAGGAGTTCTCTTTCCCTAACAACGAGGAGAAAATTCTCCATTACTGGTCTGAAATCAAGGCCTTCGAGACGCAGCTCGAGCGAACGAAGAATCTCCCGGAGTACATCTTCTATGACGGACCTCCGTTCGCTACCGGTCTTCCTCACTATGGCCACATTTTGGCTGGAACTATTAAAGACATTGTTACTCGGTACCAGTCGATGTTGGGCTACCACGTGACTCGTCGATTCGGCTGGGACTGTCATGGATTGCCTGTGGAAAACGAGATTGATAAGAAGCTAGGGATTAAGAGGAGAGCTGATGTGCTGGAAATGGGGATTGATAAGTATAACGAGGAATGCAGGAGCATCGTGACTAGATACGTGAAGGAGTGGGAGACGGTCATTACGCGGACTGGGCGATGGATCGATTTTAAGAATGATTACAAGACGATGGACTTGAATTTTATGGAGAGTGTTTGGTGGGTTTTTGCTCAATTATTCGACAAAGGTCTTGTGTATAAAGGTTTTAAGGTCATGCCATATAGTACTGGGTGCAAGACACCAGTTTCGAATTTCGAAGCCAGTCAGAACTATAAGGATGTACCTGATCCTGAAATAATGGTTGCTTTTCCAGTAGTTGACGATCCAGACAATGCGGCTTTTGTGGCTTGGACTACAACTCCATGGACTCTTCCAAGTAACCTTGCCCTTTGTGTTAATGCGAACTTTGTATATGTGAAGGTTCGGAACAAGTTCTCAGGAAAAGTGTATGTGGTTGCCAAATCTCGGTTATCAGCGCTTCCGAATGAGAAAGCAAAATCGAATGCAGCCAATAGTTCCATTGGCGATCTTAAAAAATCCAATCCAAAAATAAAGGGATCCTCAACTGGAAAAACTGAAGACCCAACAGATTTTTTTGAGGTATTGGAGGAAGTCTCTGGGGCTGCCCTTGTGGGAAAGAAGTATGAACCGTTGTTTGACTACTTTAAGGAGTTTCTTGATGTGGCGTTTAGAGTTGTTTCCGATGATTATGTAACAGATGATAGTGGTACTGGAATTGTTCACTGTGCTCCAGCATTTGGTGAAGATGATTATAGAGTCTGCATTCAGAATGAAATAATCAAGAAGGGTGAGAATTTAACTGTGGCAGTGGATGATGATGGCTGCTTCAGTGCCAAAATTACTGACTTCGTCGGGTGCTATGTCAAGGATACAGATAAGGATATTATTGAAGCAGTGAAGGCCAAAGGGAGGCTTATCAAATCTGGAACCTTTACCCATTCCTATCCTTTTTGCTGGAGATCTGACACTCCTCTTATTTACCGAGCTGTTCCTAGTTGGTTTGTTCAAGTTGAGAAGATTAAGGAACAATTATTAGAAAACAACCAGCAGACTTATTGGGTTCCTGATTTTGTAAAGGAAAAGCGGTTTCATAATTGGCTTGAAAATGCAAGAGATTGGGCTGTCAGTCGAAGTAGATTTTGGGGCACGCCTCTACCTGTATGGATTAGTGAGGACAGTGAGGAAGTTGTTGTCATTGATTCCATTGAGAAACTTGAGAAGCTCTCAGGCGCTAAGGTTTTTGATCTACACCGGCACAATATTGATCATATTACGATCCCATCTAGACGTGGTCCTGAATATGGTGTGCTTCGACGGGTTGAAGATGTTTTTGATTGTTGGTTTGAGAGTGGATCCATGCCATATGCTTATATTCACTATCCATTCGAGAATGTTGAACTTTTTGAGAAGAACTTTCCAGGTCATTTTGTGGCTGAAGGGCTAGATCAAACTCGTGGATGGTTTTATACTCTCATGGTTCTATCTACTGCTTTGTTTGGGAAGCCTGCATTTAGGAATCTCATTTGCAATGGACTTGTTCTTGCTGAGGATGGAAAGAAGATGAGTAAAAGGTTGAAAAACTACCCTTCGCCAATGGAGATTATTAATAACTATGGGGCTGATGCATTGCGATTATACCTAATAAACTCTCCAGTTGTGCGGGGGGAAACCTTGCGTTTCAAGAAGGATGGAGTTTTTGGTGTTGTTAGGGATGTGTTCCTCCCATGGTACAACGCATATAGATTCCTTGTTCAGAATGCCAAGAGGCTTGAAGTTGAGGGGTTCGCACCATTTTTTCCAGGAAACCAAGCTACCATTCAGAAGTCATCCAATGTGCTTGACCAATGGATAAACTCGGCTACTCAGAGTCTCGTGTTTTTTGTCCGCCAAGAAATGGATGGTTATCGACTTTACACGGTGGTCCCTTATCTTTTAAAATTTCTTGACAACCTTACAAATATTTACGTTAGGTTCAACCGTAAGAGACTAAAAGGTCGTACTGGAGAAGAAGACTGCAGAACAGCACTCTCAACGCTTTACAATGTACTTTTAACATCTTGTAAAGTCATGTCTCCATTTACACCGTTCTTTACTGAAGCGCTTTATCAAAATTTACGTAAAGTTTCTGATGGAGCGGAGGAAAGCATTCATTATTGTTCTTTTCCTCAAGAAGAAGGAAAGAGAGATGCAAGAATCGAACAGAGTGTTTCGCGAATGACGACAATTATTGACCTTGCTCGCAATATTCGAGAACGGCACAACAAGCCTCTTAAAGCTCCCCTCAGGGAAATGGTAGTGGTACATCCCGATGCAGACTTTCTAGACGACATTGCTGGAAAGCTGAGAGAGTATGTGCTGGAGGAACTAAACATAAGATCTCTTGTGCCATGTAAAGATACCCTGAAGTATGCTTCTTTGCGTGCAGAGCCAGATTTTAGCGTGTTAGGTAAACGTCTTGGAAAATCTATGGGCATCGTTGCGAAGGAAGTCAAAGCATTGTCACAGGAAAATATCTTGGCCTTTGAGAAAGCTGGAGAAATTACTGTTGCAAGCCATTGTTTAAAGTTAACTGATATAAAGGTTGTTCGTGATTTTAAGCGTCCTGATGGTTTGACAGAAAAGGAGATTGATGCAGCTGGAGATGGTGATGTTTTAGTGATTTTGGATTTACGACCTGATGAATCATTATTTGAGGCTGGACTTGCTCGCGAGATTGTTAATAGAATCCAGAAGTTGCGGAAGAAAGCTGCTCTTGAACCTACCGACATGGTGGAAGTCTACTTCCAGTCCTTAGACGAAGATAGATCAATTTCAGAGCGGATTTTACATAGCCAGGAACTCTACATTAGGGATGCAATTGGTTCACATTTGCTGCCAGCTGAGATAATGCCACCATATGCAGTTATCATAGCTGATGAAAATTTCCATAATATTTCTGGGATTTCATTTGCCATCAGTGTAGCCAGACCCACACCTGTGTTCAATTCAGACTCCATTCTTGCTCTATACAAAGGTGACAAAAAATTTGCACAAGGTCTTGAAGTTTACTTGTTATCCAGAGATCTTTCCAATCTGAAATCCGAGTCTCAATTTGGACGTGGAAAGATTACGGTCAATTGCATCGAGGGTTACCCCACAGTCGAAGTAGTGGTCGGAGAGCACTTCTTATTGTCGGTTGGCGATTCCTTTTCGAGGACAAAAACAGAGTAA 3555 42.31 MDEVCEGKEFSFPNNEEKILHYWSEIKAFETQLERTKNLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMLGYHVTRRFGWDCHGLPVENEIDKKLGIKRRADVLEMGIDKYNEECRSIVTRYVKEWETVITRTGRWIDFKNDYKTMDLNFMESVWWVFAQLFDKGLVYKGFKVMPYSTGCKTPVSNFEASQNYKDVPDPEIMVAFPVVDDPDNAAFVAWTTTPWTLPSNLALCVNANFVYVKVRNKFSGKVYVVAKSRLSALPNEKAKSNAANSSIGDLKKSNPKIKGSSTGKTEDPTDFFEVLEEVSGAALVGKKYEPLFDYFKEFLDVAFRVVSDDYVTDDSGTGIVHCAPAFGEDDYRVCIQNEIIKKGENLTVAVDDDGCFSAKITDFVGCYVKDTDKDIIEAVKAKGRLIKSGTFTHSYPFCWRSDTPLIYRAVPSWFVQVEKIKEQLLENNQQTYWVPDFVKEKRFHNWLENARDWAVSRSRFWGTPLPVWISEDSEEVVVIDSIEKLEKLSGAKVFDLHRHNIDHITIPSRRGPEYGVLRRVEDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKRLKNYPSPMEIINNYGADALRLYLINSPVVRGETLRFKKDGVFGVVRDVFLPWYNAYRFLVQNAKRLEVEGFAPFFPGNQATIQKSSNVLDQWINSATQSLVFFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMSPFTPFFTEALYQNLRKVSDGAEESIHYCSFPQEEGKRDARIEQSVSRMTTIIDLARNIRERHNKPLKAPLREMVVVHPDADFLDDIAGKLREYVLEELNIRSLVPCKDTLKYASLRAEPDFSVLGKRLGKSMGIVAKEVKALSQENILAFEKAGEITVASHCLKLTDIKVVRDFKRPDGLTEKEIDAAGDGDVLVILDLRPDESLFEAGLAREIVNRIQKLRKKAALEPTDMVEVYFQSLDEDRSISERILHSQELYIRDAIGSHLLPAEIMPPYAVIIADENFHNISGISFAISVARPTPVFNSDSILALYKGDKKFAQGLEVYLLSRDLSNLKSESQFGRGKITVNCIEGYPTVEVVVGEHFLLSVGDSFSRTKTE 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50961820 50980692 + Bma024538.1 Bma06g01423 84925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01423 1184 CDD IleRS_core 397 675 - -
Bma06g01423 1184 CDD Anticodon_Ia_Ile_ABEc 675 862 IPR033709 GO:0000049
Bma06g01423 1184 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma06g01423 1184 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bma06g01423 1184 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bma06g01423 1184 PRINTS Isoleucyl-tRNA synthetase signature 594 603 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bma06g01423 1184 PRINTS Isoleucyl-tRNA synthetase signature 554 567 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bma06g01423 1184 PANTHER BNAUNNG00270D PROTEIN 1 1113 - -
Bma06g01423 1184 Gene3D - 208 395 IPR009008 GO:0002161|GO:0006418
Bma06g01423 1184 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 430 IPR009008 GO:0002161|GO:0006418
Bma06g01423 1184 SUPERFAMILY Nucleotidylyl transferase 9 685 - -
Bma06g01423 1184 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 690 938 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma06g01423 1184 Hamap Isoleucine--tRNA ligase [ileS]. 2 1094 IPR023586 GO:0004822
Bma06g01423 1184 MobiDBLite consensus disorder prediction 279 300 - -
Bma06g01423 1184 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1113 IPR023586 GO:0004822
Bma06g01423 1184 Pfam Anticodon-binding domain of tRNA ligase 729 878 IPR013155 GO:0004812|GO:0006418
Bma06g01423 1184 Pfam tRNA synthetases class I (I, L, M and V) 19 274 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma06g01423 1184 Pfam tRNA synthetases class I (I, L, M and V) 306 672 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma06g01423 1184 Gene3D - 678 869 - -
Bma06g01423 1184 Pfam Domain of unknown function (DUF5915) 898 1051 - -
Bma06g01423 1184 Gene3D HUPs 4 207 IPR014729 -
Bma06g01423 1184 Gene3D HUPs 396 673 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01423 K01870 IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5] - csv:101212830 2087.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01404 Bma-Chr6:50807290 Bma06g01423 Bma-Chr6:50961820 1.36E-80 dispersed
Bma06g01423 Bma-Chr6:50961820 Bma14g02070 Bma-Chr14:44059627 1.82E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007512 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01423 Bma_Chr06 FPKM 8.91907 8.030712 6.729205 7.872406 12.503484 12.445724 12.536209 10.136259 9.20462 10.175218