Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01427 ATGCAGGCACATGCCCCTCCTCCCGGCTACTTTGTACGATTGGAAAATACAAGTGCTGTAGACGACCTATATCTAAGGAAAAAGACGAAAATGCGCAAGTGGTTGTGTTGTTCATGTCACGTCGAAGAGTCCCACCCTGAAGCTGAAAAAGAGCGCCTCAAAAACCCGAGGAGTTATGGAGATGGTCGTCCGAAGGGACAAAAGGCACCTGCTCGGGCCAAAGTCGAACCACAAAAGGCCCCGCCGCCAATACAAGTGCCTGCATTGTCTCTGGCGGAACTGAAAGAAAAGACTGATAATTTTGGGTCCAAAACATTGATTGGAGAAGGATCTTACGGGAGAGTTTATTACGCAACCTTAAATAACGGGAAAACAATGGCAGTAAAAAAGCTTGATGTTTCCTCCGAACCTGACTCAACTGCTGATTTTTTGACTCAGGTGTCTATGGTCTCCAGGCTAAAACATGACAATTTTGTGGAGTTGCTCGGTTATTGTGATGAAGGAAATCTTCGTATACTCGGATTTGAGTTTGCAACTATGGGTTCTCTACACGATATCTTGCATGATGAACTGCTTTTTTTTTTTTTAATTATTTCTTATTTAATAAATATGAGCTCAGGAAGAAAGGGAGTTCAAGGAGCCCAACCAGGGCCTGTGCTTGATTGGTCACAGCGGGTGAGAATAGCAGTCGATGCAGCTAGAGGGTTGGAATATTTGCACGAGAAAGTTCAACCTTCTGCGATACACAGAGATGTTCGATCCAGCAATGTTCTTCTCTTTGACGACTTCAAAGCGAAGATTGCTGATTTTAATCTTTCCAATCAAACTCCTGATATGGCTGCTCGTCTTCATTCTACTCGAGTTTTGGGAACCTTCGGCTATCACGCTCCAGAGTATGCCATGACTGGGCAGTTGACGCAAAAGAGCGATGTGTATAGCTTTGGGGTCGTCTTGCTCGAGCTTCTCACCGGGAGAAAGCCCGTTGATCATACGATGCCTCGTGGACAACAGAGTCTCGTGACTTGGGCAACTCCAAGACTGAGTGAAGACAAAGTAAGGCAATGTGTAGATCCAAAACTGAAAGGGGAGTATCCCCCAAAAGCCATAGCAAAGGCAACAGCGGTGGCGGCACTGTGCGTACAGTACGAAGCGGAGTTTCGACCAAACATGAGCATTGTTGTGAAGGCCCTCCAACCGCTCGTGAAGCCTCCACCGGCCCCAATGCCAGACTCTTGA 1236 46.68 MQAHAPPPGYFVRLENTSAVDDLYLRKKTKMRKWLCCSCHVEESHPEAEKERLKNPRSYGDGRPKGQKAPARAKVEPQKAPPPIQVPALSLAELKEKTDNFGSKTLIGEGSYGRVYYATLNNGKTMAVKKLDVSSEPDSTADFLTQVSMVSRLKHDNFVELLGYCDEGNLRILGFEFATMGSLHDILHDELLFFFLIISYLINMSSGRKGVQGAQPGPVLDWSQRVRIAVDAARGLEYLHEKVQPSAIHRDVRSSNVLLFDDFKAKIADFNLSNQTPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVRQCVDPKLKGEYPPKAIAKATAVAALCVQYEAEFRPNMSIVVKALQPLVKPPPAPMPDS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50993322 50995926 - Bma024541.1 Bma06g01427 84929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01427 411 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Bma06g01427 411 Pfam Protein tyrosine and serine/threonine kinase 105 397 IPR001245 GO:0004672|GO:0006468
Bma06g01427 411 PIRSF ILK 195 403 - -
Bma06g01427 411 PIRSF ILK 41 192 - -
Bma06g01427 411 SUPERFAMILY Protein kinase-like (PK-like) 84 406 IPR011009 -
Bma06g01427 411 MobiDBLite consensus disorder prediction 45 82 - -
Bma06g01427 411 MobiDBLite consensus disorder prediction 45 72 - -
Bma06g01427 411 Gene3D Phosphorylase Kinase; domain 1 67 177 - -
Bma06g01427 411 Gene3D Transferase(Phosphotransferase) domain 1 197 403 - -
Bma06g01427 411 ProSiteProfiles Protein kinase domain profile. 101 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01427 411 SMART tyrkin_6 101 397 IPR020635 GO:0004713|GO:0006468
Bma06g01427 411 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 19 403 - -
Bma06g01427 411 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 19 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01427 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - mnt:21407434 654.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00954 Bma06g01427 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01241 Bma-Chr5:51791420 Bma06g01427 Bma-Chr6:50993322 0 dispersed
Bma06g01427 Bma-Chr6:50993322 Bma09g00825 Bma-Chr9:47108775 7.34E-172 dispersed
Bma04g00477 Bma-Chr4:4081196 Bma06g01427 Bma-Chr6:50993322 1.04E-169 transposed
Bma04g00998 Bma-Chr4:16247697 Bma06g01427 Bma-Chr6:50993322 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g252 . . . . . Bpe14g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00096 Bda11g00468 . . Bpe13g00731 Bma02g00954 Bma06g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66562 PF07714 PK_Tyr_Ser-Thr 2.80E-45 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01427 Bma_Chr06 FPKM 26.125919 29.039795 8.03356 8.579693 20.601749 21.936705 21.081459 5.074312 3.808151 3.8909