Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01437 ATGAAAATCCAGTGCGATGTTTGCGAGAAAGCTCCGGCAACGGTGATTTGTTGTGCAGACGAGGCTGCACTGTGTGCGAAATGTGATGTTGAAGTTCATGCAGCCAACAAACTTGCGAGCAAGCACCAGAGGCTTCGTCTCGAATGTCTCTCCACCAAGCTACCTAAATGCGACGTCTGCCAAGACAAGATAGCTTACATCTTCTGCGTCGAAGATAGGGCCCTGCTCTGTCGCGACTGTGACGAACCAATTCACTCGGCTGGTAGCCTTTCTGCAAATCACCAGAGGTTTCTTGCCACCGGAATCCGAGTGGGTCTGAGTTCCGATTGTAGAATGGATAAACAAAAGACTTCCATTGAACCTCCTAATCAGAAGATTCAACAACAATCTCATAAAATGCCTGTACATGAAGCTTCTAGTTTCACATCGCCATGGCCTGTTGACGATGTGCTTCAGTTTGCGGACTTCGAATCGTCTAATAAGGAGTCATTTGAGTTTGGAGAGCTTGATTGGCTGGCAGACATAGGTCTTCTGGGTGTAGCAGCGGCTGAAGTTCCTCAACTTTCAACGTCTCAATCAAGTATTGCCATCTCCAACAGACCCAGAATAGGTAGTCCACCAAACAAGAAGCCCCGGATTGCAATCGAAGAAGACGATCACGAGCATTTCACCGTTCCAGATCTCGGATGA 690 47.83 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLRLECLSTKLPKCDVCQDKIAYIFCVEDRALLCRDCDEPIHSAGSLSANHQRFLATGIRVGLSSDCRMDKQKTSIEPPNQKIQQQSHKMPVHEASSFTSPWPVDDVLQFADFESSNKESFEFGELDWLADIGLLGVAAAEVPQLSTSQSSIAISNRPRIGSPPNKKPRIAIEEDDHEHFTVPDLG 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51082648 51083906 - Bma024552.1 Bma06g01437 84939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01437 229 MobiDBLite consensus disorder prediction 190 229 - -
Bma06g01437 229 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 229 - -
Bma06g01437 229 Gene3D Classic Zinc Finger 1 94 - -
Bma06g01437 229 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 229 - -
Bma06g01437 229 MobiDBLite consensus disorder prediction 211 229 - -
Bma06g01437 229 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bma06g01437 229 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Bma06g01437 229 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Bma06g01437 229 CDD Bbox1_BBX-like 5 47 - -
Bma06g01437 229 CDD Bbox1_BBX-like 56 98 - -
Bma06g01437 229 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma06g01437 229 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma06g01437 229 SMART bboxneu5 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01437 Bma-Chr6:51082648 Bma10g00461 Bma-Chr10:5244910 8.08E-45 dispersed
Bma06g01437 Bma-Chr6:51082648 Bma13g00920 Bma-Chr13:39618056 9.48E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57536 PF00643 zf-B_box 6.00E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01437 - - pvy:116135400 340.887