Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01440 ATGATGCAGGTGAGGAGTGGGCTATGTGTCTGGCCGGGTATGAGACAAATTTGCCTTAGAAAAGGCCTTTTGTATGGGTTCATGCGACTATTTTCTTCACCATTAAAGACCCTGCGTGAAGCTAGTCGATCACTTAGAGTTACTCAGTTTTGCAGCGTGGTTAATATGTCATCCACTTTACAAATTGAATTAGTGCCTTGTCTTCAAGACAATTATGCATATATCTTGCATGATGTTGATACGGGCACTGTTGGTGTTGTCGATCCTTCAGAAGCTTCACCCATTATTGATGCTTTGAGTAGGAAAAACAGGAATTTAAATTATATACTCAATACTCATCATCATAATGATCATACGGGCGGGAATACAGAATTGAAAGCGAGGTATGGAGCTAAGGTGATTGGTTCAGGAGTGGATAAAGAGAGGATACCTGGAATTGATATTGCTTTGAATGATGGCGACAAGTGGATGTTTGCAGGCCATGAGGTTCGGGTAATGGCAACTCCTGATTATCTTAGAAATTGTCATGCTCTCTCAAATTGTGACTGTAATGTCTTAACTTTATTTTTGGTTTTTGGATCAATGGTTATTTCTGATTTTTTTTTTTTTCTGGGTTTATGTGGTTTATGCATTAAAGTAGTCTTTGTTGTTTTGGAATTTATGGCAGGTCACATAAGCTTCTATTTTCCTGGGTCAGAGGCAATTTTTACAGGTGATGCTCTGTTCAGTTTATCTTGTGGCAAGCTTTTTGAAGGAACCCCTGAACAAATGGTGTCTTCGCTTGGAAAGATCGCGTCTTTACCAGATACTACGAATATATTTTGCGGGCATGAATATACGTTGAGCAATTCGAAGTTCGGCTTGTCCATAGAACCCAAGAATGAGGCTCTTAAGACGTACGCAGCCCAAGTAGCGCACACTCGCAGCAAAGGCTTGCCAACGATTCCAACGACGCTGAAGACGGAGAAGTTGTGCAACCCGTTCCTCCGCACATCGAGTACAGAGATCCGTCAATCGTTGAAAATTCCAACAAACGCTAACAAAGTGGAAGCCTTGGCCGCGATTCGACGAGCAAAGGATGATTATTTTTAG 1092 41.48 MMQVRSGLCVWPGMRQICLRKGLLYGFMRLFSSPLKTLREASRSLRVTQFCSVVNMSSTLQIELVPCLQDNYAYILHDVDTGTVGVVDPSEASPIIDALSRKNRNLNYILNTHHHNDHTGGNTELKARYGAKVIGSGVDKERIPGIDIALNDGDKWMFAGHEVRVMATPDYLRNCHALSNCDCNVLTLFLVFGSMVISDFFFFLGLCGLCIKVVFVVLEFMAGHISFYFPGSEAIFTGDALFSLSCGKLFEGTPEQMVSSLGKIASLPDTTNIFCGHEYTLSNSKFGLSIEPKNEALKTYAAQVAHTRSKGLPTIPTTLKTEKLCNPFLRTSSTEIRQSLKIPTNANKVEALAAIRRAKDDYF 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51099076 51104464 - Bma024555.1 Bma06g01440 84942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01440 363 PANTHER HYDROXYACYLGLUTATHIONE HYDROLASE 3 173 - -
Bma06g01440 363 PANTHER HYDROXYACYLGLUTATHIONE HYDROLASE 221 362 - -
Bma06g01440 363 SMART Lactamase_B_5a 70 277 IPR001279 -
Bma06g01440 363 CDD hydroxyacylglutathione_hydrolase_MBL-fold 65 277 IPR035680 -
Bma06g01440 363 Pfam Metallo-beta-lactamase superfamily 80 135 IPR001279 -
Bma06g01440 363 Gene3D - 60 186 IPR036866 -
Bma06g01440 363 Gene3D - 220 362 IPR036866 -
Bma06g01440 363 Hamap Hydroxyacylglutathione hydrolase [gloB]. 60 362 IPR017782 GO:0004416|GO:0019243
Bma06g01440 363 Pfam Hydroxyacylglutathione hydrolase C-terminus 278 361 IPR032282 -
Bma06g01440 363 PANTHER BETA LACTAMASE DOMAIN 3 173 - -
Bma06g01440 363 SUPERFAMILY Metallo-hydrolase/oxidoreductase 60 360 IPR036866 -
Bma06g01440 363 PANTHER BETA LACTAMASE DOMAIN 221 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01440 K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase [EC:3.1.2.6] - mnt:21399213 493.812
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00969 Bma06g01440 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01048 Bma-Chr8:49606747 Bma06g01440 Bma-Chr6:51099076 3.89E-47 transposed
Bma02g00969 Bma-Chr2:49879562 Bma06g01440 Bma-Chr6:51099076 8.64E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1275 . . . . . Bpe14g01061 . . . . Cma06g01708 Cma14g01412 . Car14g01242 Sed02g0960 . . Bhi01g03727 Tan10g1384 Cmetu07g1769 . . . Lcy11g1001 . . . . . . . . . . . . . . Cme07g01973 Blo02g00447 Blo07g00115 Bda11g00477 Bda13g00253 . . Bma02g00969 Bma06g01440 . . Cmo14g01447 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006291 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01440 Bma_Chr06 FPKM 83.667488 92.973137 15.716079 17.010836 47.558334 47.437386 47.450241 66.295029 65.080971 67.78936