Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01458 ATGGAGAAGAAAGAAGAGGCTAAAACTGAGAATTCCAGTATGGCAAATTCATCCCTCATGTTCTCCGATGAGATGCCGGCGACCTTTGCTTTATCTGGCATCTTCGACATCCCATGTGAGAACAAAAATCAATCCTTAGGCTTTTTCGATATGATGGGTATCGAAGATTACAGTGAATCCTTATTCGATGTCTTTTCAATGCCGTTGTTGGCGCCGGAACCGCCTTCTACCGTCCCGGAGTCATCGGAGGTGCTGAATACTCCAGCGACGCCTAACTCTCCTACAATTTCTTCATCCTCCAACGAAGCGGCGAATGATGAACAGACAAAAGCTGGAGACGAGGATGAGCAAGATCACGAAAAGGCTAATAAACATTTGAAAACGAAGAAGAAGAAGCAGAAACGGCAGAGAGAGCCGAGATTTGCGTTTATGACGAAGAGCGAAGTCGACCAGTTAGACGATGGCTACCGATGGCGGAAATACGGACAGAAGGCTGTAAAAAACAGCCCCTATCCGAGTTGTTCGTTTTCGGTGCATTATCTTGATTACATTCCTAATAGCTGCTGGCGGTGTCTTTGTTTTAGGTACAAAGGCTTCAATGAATATGCTAGATCGAAAAGAATTGATGTTAGCTCACCTGTCGGACTCGATATTCTTGTTGATGGAACAGTTCCTACAGGCTCTGGTCTGTCAAGCTCTGCAGCATTTGTTTGCTCGTCTACTATAGCCATAATGGCTGCGTTCGATGTGAATTTTCCTAAGTTGTTAAGAACGATGAATTATTGGTTGTCTGGTATGCAAGGGACTACAAAATTTTCAACAAATTGTGAAAATAGATTTGTATGTTGTTTAAAACAGAAAGAAATTGCCCAGCTTACATGTGAATGTGAGAGACACATTGGTACACAATCCTGCGGAATGGATCAGGCAATTTCAGTGATGGCCAGATCTGGGTTTGCAGAGCTGATTGATTTTAATCCGATCCGAGCCACTGATGTGAAACTTCTGGCCGGTGGAACTTTTATCATAGCTCATGCTTTGGCGGAATCGCAGCAAGCAGTCACGGCTGCTACAAATTACAATAACAGAGTTGTCAAATGTCAGCTTTCTGCAATCGTTCTTGGGATAAAGCTCGGAATGAAACCAAATGAAGCGATATCAAAAGTGAAAACAGCCCTATTGAAGGAAGAACCTTATACTGCTGAAGAGATCGAGGAAATCACCGAGGAAAATCTATCATCGGTCTTGAGCGATTCTCTGACATTGTTGGATGTGTTGAAAGCCGCAAAGCCCTTCAAGTTGCATCAGGTACTTACCTTATATTTCTGTCATGAAAATTGTTCTTTATTTTTATTAAAATATATTTTTCAGAGAGCCTCTCATGTCTACTCCGAAGCCAGAAGAGTGTACTGCAGTGTCCTCTACGAGTGCAGCTGTCCGGAGTTGGAAGAACTGTTTAATATATGCCGAGAAAATGGTGCGTTCGGGGTAAGGCTGACCGGAGCCGGATGGGGAGGTTGTGCAGTTGCTTTGGTTAAAGAGAGCATAGTTCCTAAGTTTATCCTTAATTTGAAGGAAAGCTTCTACCAATCAAGGATTGATAAAGGGATCATCGACAACAATGATCTTGGTCTCTACATCTTTGCTTCAAAGCCTTCAAGTGGAGCTGCAATATTCAAGTTTTAG 1686 42.94 MEKKEEAKTENSSMANSSLMFSDEMPATFALSGIFDIPCENKNQSLGFFDMMGIEDYSESLFDVFSMPLLAPEPPSTVPESSEVLNTPATPNSPTISSSSNEAANDEQTKAGDEDEQDHEKANKHLKTKKKKQKRQREPRFAFMTKSEVDQLDDGYRWRKYGQKAVKNSPYPSCSFSVHYLDYIPNSCWRCLCFRYKGFNEYARSKRIDVSSPVGLDILVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKLLRTMNYWLSGMQGTTKFSTNCENRFVCCLKQKEIAQLTCECERHIGTQSCGMDQAISVMARSGFAELIDFNPIRATDVKLLAGGTFIIAHALAESQQAVTAATNYNNRVVKCQLSAIVLGIKLGMKPNEAISKVKTALLKEEPYTAEEIEEITEENLSSVLSDSLTLLDVLKAAKPFKLHQVLTLYFCHENCSLFLLKYIFQRASHVYSEARRVYCSVLYECSCPELEELFNICRENGAFGVRLTGAGWGGCAVALVKESIVPKFILNLKESFYQSRIDKGIIDNNDLGLYIFASKPSSGAAIFKF 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51257200 51265384 - Bma024572.2 Bma06g01458 84960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01458 561 Gene3D - 359 473 - -
Bma06g01458 561 PRINTS Mevalonate kinase family signature 222 244 - -
Bma06g01458 561 PRINTS Mevalonate kinase family signature 496 513 - -
Bma06g01458 561 Gene3D - 130 346 IPR014721 -
Bma06g01458 561 SUPERFAMILY Ribosomal protein S5 domain 2-like 213 334 IPR020568 -
Bma06g01458 561 PANTHER BNAA01G32760D PROTEIN 280 470 - -
Bma06g01458 561 PANTHER BNAA01G32760D PROTEIN 192 254 - -
Bma06g01458 561 PANTHER BNAA01G32760D PROTEIN 393 560 - -
Bma06g01458 561 SUPERFAMILY GHMP Kinase, C-terminal domain 351 557 IPR036554 -
Bma06g01458 561 SUPERFAMILY WRKY DNA-binding domain 144 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma06g01458 561 Pfam WRKY DNA -binding domain 153 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01458 561 MobiDBLite consensus disorder prediction 73 142 - -
Bma06g01458 561 Gene3D - 474 535 IPR036554 -
Bma06g01458 561 ProSitePatterns GHMP kinases putative ATP-binding domain. 224 235 IPR006203 GO:0005524
Bma06g01458 561 ProSiteProfiles WRKY domain profile. 147 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01458 561 PRINTS Galactokinase signature 215 233 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bma06g01458 561 PRINTS Galactokinase signature 457 471 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bma06g01458 561 MobiDBLite consensus disorder prediction 107 123 - -
Bma06g01458 561 Pfam GHMP kinases N terminal domain 217 314 IPR006204 GO:0005524
Bma06g01458 561 PANTHER MEVALONATE KINASE/GALACTOKINASE 280 470 - -
Bma06g01458 561 PANTHER MEVALONATE KINASE/GALACTOKINASE 192 254 - -
Bma06g01458 561 PANTHER MEVALONATE KINASE/GALACTOKINASE 393 560 - -
Bma06g01458 561 Coils Coil 116 136 - -
Bma06g01458 561 Pfam GHMP kinases C terminal 476 529 IPR013750 -
Bma06g01458 561 SMART WRKY_cls 152 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01458 561 MobiDBLite consensus disorder prediction 79 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01458 K18674 GALK2; N-acetylgalactosamine kinase [EC:2.7.1.157] - zju:107404688 452.595
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00935 Bma06g01458 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01458 Bma-Chr6:51257200 Bma10g00947 Bma-Chr10:20283799 8.23E-40 dispersed
Bma02g00937 Bma-Chr2:49246885 Bma06g01458 Bma-Chr6:51257200 1.80E-174 transposed
Bma02g00949 Bma-Chr2:49433254 Bma06g01458 Bma-Chr6:51257200 1.08E-174 transposed
Bma02g00935 Bma-Chr2:49202332 Bma06g01458 Bma-Chr6:51257200 6.49E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g48 . . Bda03g01188 . Bpe04g01122 Bpe14g01092 . . . Cmo17g00367 Cma06g01571 Cma14g01581 Car06g01335 Car14g01391 Sed02g1129 Cpe08g00144 Cpe03g01319 Bhi01g01100 Tan10g1087 Cmetu06g2518 Lac11g0974 Hepe05g1368 . Lcy11g1329 Cla06g00419 Cam06g0441 Cec06g0447 Cco06g0446 Clacu06g0428 Cmu06g0427 Cre06g1206 . Cone15ag0722 . Cone4ag0098 Lsi05g01411 Csa06g01861 . Cme06g00800 Blo02g00473 Blo07g00133 Bda11g00494 Bda13g00224 . Bpe13g00706 Bma02g00935 Bma06g01458 . Cmo06g01565 Cmo14g01612 . Cma17g00379 . Car17g00350 Cpe12g00331 . . . . . . . . Cla05g00716 Cam05g0783 Cec05g0789 Cco05g0785 Clacu05g0773 Cmu05g0738 Cre05g0812 . Csa03g01529 Chy06g00766 Cme11g02090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034874 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57541 PF00288 GHMP_kinases_N 3.50E-10 CL0329 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01458 Bma_Chr06 FPKM 5.29558 5.22702 5.235922 6.944022 7.275965 7.606714 8.44774 5.840586 3.423798 1.912168