Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01466 ATGGCTTCCGGTAGTAACACAGCTCAGTCCGATCATCAACAAGGGCAGTCCTCTAACGCAAACACGAGCAACACCGTAGTGCTCCGGTCGGAATCCGTCAGCAAAGCCATAGCGCAGTACACCGTCGATGCTCGTCTCCACGCGGTCTTCGAGCAGTCAGGTAAGTCTGGAAAGTGCTTTGACTACTCCCAGTCTCTGAAAACCTCCACACAATCGGTTCCTGAACAACAAATTACGGCTTACCTTTCCAATATTCAAAGGGGAGGGCGTATCCAGCCCTTTGGCTGTATGATAGCAGTAGAGGAAGCTAGTTTTCGAGTCATCGCATATAGTGTTAACGCTCGCGAAATGCTAGGCCTCACTCCCCAATCCGTTCCTAACCTCGAAAAGCCAGAAATTCTCACAATCGGTACCGATGTGAGGAGTTTATTCACCCAATCTAGCGTACTTTTACTCGAGAGAGCATTTAGGTCTCGAGAAATCACCTTGTTGAATCCAGTGTGGATTCATTCGAAGAATTCTGGGAAACCATTTTACGCAATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCTAGGACTGAGGATCCTGCCCTGTCGATTGCCGGGGCAGTGCAGTCTCAGAAACTAGCGGTTCGAGCTATTTCCCAGCTGCAATCACTTCCAGGTGGTGATGTTAAACTCTTGTGTGATACTGTGGTTGATTGTGTTAGGGAGCTTACTGGTTATGATCGAGTTATGGTATTTAAATTCCACGAAGACGAGCATGGAGAGGTTGTTGCAGAAAGCAAGAAGTCGAATTTAGAACCATATATTGGATTACACTATCCGGCAACTGACATTCCTCAGGCTTCAAGGTTTCTCTTCAAGCAGAATCGGGTAAGGATGATCGTCGACTGCCATTCGACGCCTGTTCGTGTCATTCAGGACGAAGGATTAGTGCAACCCTTATGTTTGGTCGGTTCGACCTTAAGAGCTCCCCATGGTTGTCATGCTCAATACATGGCTAATATGGGTTCTGTCGCTTCATTAGCAATGGCAGTCATTATCAACGGTAATGATAACGAAACGGGTGGTGGCCGAAACTCGACAAGGCTCTGGGGTTTGGTTGTCTGCCACCATAATTCGGCTCGGTGCATCCCCTTCCCGCTCCGTTATGCTTGCGAGTTTCTAATGCAGGCGTTTGGACTGCAACTGAATATGGAACTCCAGCTGGCCTCGCAGTTATCAGAAAAACATGTTTTGAAAACTCAAACTCTTTTGTGCGATATGATTCTTCGAGATTCGCCAGCCGGAATTGTTACTCAAAGTCCGAGTATTATGGATTTAGTGAAATGTGACGGGGCAGCACTTTACTACCAAGGGAAGTGTTATATACTAGGAGTGACCCCGACCGAAGCACAAATAAAAGATATCGCAAATTGGTTGTTGGCTTTTCATGGAGATTCGACCGGGCTAAGTACCGACAGCTTAGCCGAGGCTGGCTACCCTGGAGCAGCATTGCTCGGCGATGCAGTTTGTGGAATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTCTTCTGGTTTCGATCTCACACAGCCAAAGAGATCAAGTGGGGTGGAGCAAAGCATCATCCGGACGACAAAGACGATGGTCAGAGAATGCATCCACGCTCTTCGTTCAATGCCTTTCTAGAAGTCGTAAAAAGCCGGAGTTTGCCTTGGGAGAATGCGGAGATGGATGCTATTCATTCGCTGCGGCTTATTCTCCGAGACTCATTCAAAGACACCGAATTCAACAACTCAAAGGCAGTTATAGATGCCCTTCCCAAGAATCTCGAAATGGAAAGGTTGGATGAGCTCAGTTCAGTTGCCAGAGAAATGGTTAGGTTGATTGAAACTGCTACTGCCCCCATTTTTGCTGTAGATGTCAATGGTCGAATAAATGGATGGAACGCGAAGGTTGCAGAGTTGACCGGATTTCCAGTGGAAGAGGCTATGGGTAAATCCTTGGTCCAAGATCTCATATATAAGGAATCTGAAGAAACCGTCGAGAAACTTCTTCAACGAGCTTTGAGAGGCGAAGAAGACAAGAATGTAGAGATAAAATTGAAGATGTTTGGCTCAGAACAACATAAACGGCCCATTTTTGTCGTAGTCAATGCATGCTCAAGCCGGGATTACACAGACAATGTCGTCGGAGTTTGTTTTGTTGGTCAGGATGTTACCGACCAAAAAGTTGTTATGGATAAGTTCATTAACATACAAGGAGATTACAAGTCTATAATTCACAGTCCGAACCCTTTGATCCCTCCCATATTTGCCTCGGACGACAACACATACTGCTCGGAGTGGAATACTGCTATGGAAAACCTCACCGGCTGGTCAAAAGGGGATATTGTCGGAAAAATATTGGTTGGAGAGGTCTTTGGCGGTTGTTGTCGGCTCAAGGGTTCGGATGGACTAACGAAATTTATGATTGTCTTACACAACGCCATCGGAGGAAATGATACCGACAAATTTCCGTTTTCATTTTTCAACCGGAACGGGAAATATGTGCAGGCCCTTTTAACTGCAAACAAGAGGGTCGACATGAAGGGTAATATCATTGGAGCTTTCTGCTTCTTACAGATGGTAAGTCCTGAATTACAGCAAGCCCTTAAAGTCCAGAGGTTGCAGGAGAAGAGATGCGTGGCAAGGATGAAAGAGCTTGCCTATATTTGTCAAGAAGTCAAAAATCCTTTTAATGGAATTCGATTTACTCGTTCACTTTTGGAAGCTACGGAATTAACTGAAGATCAAAAGCAGTTTTTGGAGATAAGCACCGCTTGCGAGAAGCAGATGTCGAAGATTATGAAAGATGTGGATTTGGAAAGCATCGACGACGGCCCATTGGAGCTCGAGAAGTCGGAGTTCTTGCTCGGGAGTGTCATTGATGCTGTTGTTGGCCAAGTAATGATAGCAGTTAGAGAAAGAAACTTGCTGCTAATTCGAGATATTCCGGAAGAAGTAAAAAGTCTCGGAGTTTATGGTGATCAAGTCAGAATTCAACAAGTTCTGACCGATTTTCTGTTGAATATGGTGCAATATGCGTCTTCTCCGGATGGTTGGGTTGAGATTCGAGTATGTCCAAGCTTGAAGCAAATCTCAGAGGGACTCACTCTTGTGCATAATGAATTCAGGATTTTGTGCTCGGGCGACGGACTTCCCCCGGAATTGGTACAAGACATGTTTCATAGCAGCAGATGGGTGACTCGAGAAGGCCCCGGATTGAGCATATGTTGTAAGATTTTGAAGCTCATGAACGGGCAAGTCCAGTACATCAGAGAGTCAGGAAAACTGTTGCTTCCTAATTACTTTTGA 3357 45.52 MASGSNTAQSDHQQGQSSNANTSNTVVLRSESVSKAIAQYTVDARLHAVFEQSGKSGKCFDYSQSLKTSTQSVPEQQITAYLSNIQRGGRIQPFGCMIAVEEASFRVIAYSVNAREMLGLTPQSVPNLEKPEILTIGTDVRSLFTQSSVLLLERAFRSREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVDCVRELTGYDRVMVFKFHEDEHGEVVAESKKSNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHSTPVRVIQDEGLVQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVIINGNDNETGGGRNSTRLWGLVVCHHNSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLKTQTLLCDMILRDSPAGIVTQSPSIMDLVKCDGAALYYQGKCYILGVTPTEAQIKDIANWLLAFHGDSTGLSTDSLAEAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPDDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLRLILRDSFKDTEFNNSKAVIDALPKNLEMERLDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVAELTGFPVEEAMGKSLVQDLIYKESEETVEKLLQRALRGEEDKNVEIKLKMFGSEQHKRPIFVVVNACSSRDYTDNVVGVCFVGQDVTDQKVVMDKFINIQGDYKSIIHSPNPLIPPIFASDDNTYCSEWNTAMENLTGWSKGDIVGKILVGEVFGGCCRLKGSDGLTKFMIVLHNAIGGNDTDKFPFSFFNRNGKYVQALLTANKRVDMKGNIIGAFCFLQMVSPELQQALKVQRLQEKRCVARMKELAYICQEVKNPFNGIRFTRSLLEATELTEDQKQFLEISTACEKQMSKIMKDVDLESIDDGPLELEKSEFLLGSVIDAVVGQVMIAVRERNLLLIRDIPEEVKSLGVYGDQVRIQQVLTDFLLNMVQYASSPDGWVEIRVCPSLKQISEGLTLVHNEFRILCSGDGLPPELVQDMFHSSRWVTREGPGLSICCKILKLMNGQVQYIRESGKLLLPNYF 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51314368 51318348 - Bma024580.1 Bma06g01466 84968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01466 1118 Gene3D PAS domain 769 881 - -
Bma06g01466 1118 PIRSF Phytochrome_conventional 13 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma06g01466 1118 Pfam GAF domain 230 407 IPR003018 GO:0005515
Bma06g01466 1118 ProSiteProfiles Histidine kinase domain profile. 904 1118 IPR005467 -
Bma06g01466 1118 CDD HATPase_Phy-like 1008 1111 IPR044767 -
Bma06g01466 1118 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Bma06g01466 1118 SMART pas_2 755 825 IPR000014 -
Bma06g01466 1118 SMART pas_2 624 691 IPR000014 -
Bma06g01466 1118 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Bma06g01466 1118 CDD HisKA 897 953 IPR003661 GO:0000155|GO:0007165
Bma06g01466 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1110 IPR003594 -
Bma06g01466 1118 SUPERFAMILY GAF domain-like 415 592 - -
Bma06g01466 1118 Gene3D PAS domain 84 332 - -
Bma06g01466 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 873 IPR035965 -
Bma06g01466 1118 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Bma06g01466 1118 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Bma06g01466 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Bma06g01466 1118 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Bma06g01466 1118 CDD PAS 633 740 IPR000014 -
Bma06g01466 1118 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 1111 - -
Bma06g01466 1118 PANTHER PHYTOCHROME 9 1111 - -
Bma06g01466 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Bma06g01466 1118 Gene3D - 412 585 IPR043150 -
Bma06g01466 1118 SMART gaf_1 229 417 IPR003018 GO:0005515
Bma06g01466 1118 Gene3D PAS domain 615 750 - -
Bma06g01466 1118 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Bma06g01466 1118 Pfam PAS fold 80 196 IPR013654 GO:0006355
Bma06g01466 1118 Pfam PAS fold 756 875 IPR013767 GO:0006355
Bma06g01466 1118 Pfam PAS fold 625 740 IPR013767 GO:0006355
Bma06g01466 1118 TIGRFAM sensory_box: PAS domain S-box protein 629 744 IPR000014 -
Bma06g01466 1118 MobiDBLite consensus disorder prediction 1 24 - -
Bma06g01466 1118 SMART HKATPase_4 1009 1118 IPR003594 -
Bma06g01466 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1110 IPR036890 -
Bma06g01466 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Bma06g01466 1118 CDD PAS 767 875 IPR000014 -
Bma06g01466 1118 SUPERFAMILY GAF domain-like 209 404 - -
Bma06g01466 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Bma06g01466 1118 Coils Coil 675 695 - -
Bma06g01466 1118 Gene3D - 210 568 IPR029016 -
Bma06g01466 1118 Gene3D - 937 1113 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01466 K12121 PHYB; phytochrome B - zju:107418995 1879.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00993 Bma06g01466 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01466 Bma-Chr6:51314368 Bma14g00963 Bma-Chr14:10979022 0 dispersed
Bma05g00993 Bma-Chr5:48415383 Bma06g01466 Bma-Chr6:51314368 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00954 . 186 1234 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1264.2
Bma14g01923 . 17 996 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1345.9
Bma04g00854 . 73 1029 Histidine Kinase Gene Family AT2G01830 52.9 9.1e-273 936.8
Bma02g01307 . 303 1275 Histidine Kinase Gene Family AT2G01830 51.4 5.5e-270 927.5
Bma01g00611 . 1 1119 Histidine Kinase Gene Family AT1G09570 76.7 0.0e+00 1754.2
Bma12g00850 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1253.4
Bma05g00993 CCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.8 0.0e+00 1171.0
Bma06g01466 CCT 29 1111 Histidine Kinase Gene Family AT1G09570 53.1 0.0e+00 1157.5
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT1G09570 51.1 4.8e-314 1073.9
Bma05g00993 CCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1629.4
Bma06g01466 CCT 30 1084 Histidine Kinase Gene Family AT2G18790 74.6 0.0e+00 1598.2
Bma01g01487 BCT 8 1043 Histidine Kinase Gene Family AT2G18790 62.5 0.0e+00 1290.4
Bma14g00963 BCT 1 1025 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1215.7
Bma12g00850 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1110.9
Bma01g00611 . 21 1055 Histidine Kinase Gene Family AT2G18790 51.2 8.4e-309 1056.6
Bma12g00850 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1401.0
Bma05g00993 CCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1116.7
Bma06g01466 CCT 21 1109 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1111.3
Bma01g00611 . 9 1114 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1097.8
Bma05g00993 CCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.4 0.0e+00 1654.8
Bma06g01466 CCT 30 1108 Histidine Kinase Gene Family AT4G16250 74.0 0.0e+00 1619.8
Bma01g01487 BCT 29 1105 Histidine Kinase Gene Family AT4G16250 60.8 0.0e+00 1318.5
Bma14g00963 BCT 15 1087 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1237.2
Bma12g00850 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1137.1
Bma01g01487 BCT 7 1106 Histidine Kinase Gene Family AT4G18130 64.5 0.0e+00 1409.8
Bma14g00963 BCT 19 1088 Histidine Kinase Gene Family AT4G18130 62.1 0.0e+00 1331.2
Bma05g00993 CCT 37 1119 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1250.3
Bma06g01466 CCT 38 1108 Histidine Kinase Gene Family AT4G18130 58.1 0.0e+00 1243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01466 Bma_Chr06 FPKM 0.390901 0.917066 0.889901 0.643315 2.138626 0.0 0.0 0.887379 0.392022 0.68356