Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bma06g01466	ATGGCTTCCGGTAGTAACACAGCTCAGTCCGATCATCAACAAGGGCAGTCCTCTAACGCAAACACGAGCAACACCGTAGTGCTCCGGTCGGAATCCGTCAGCAAAGCCATAGCGCAGTACACCGTCGATGCTCGTCTCCACGCGGTCTTCGAGCAGTCAGGTAAGTCTGGAAAGTGCTTTGACTACTCCCAGTCTCTGAAAACCTCCACACAATCGGTTCCTGAACAACAAATTACGGCTTACCTTTCCAATATTCAAAGGGGAGGGCGTATCCAGCCCTTTGGCTGTATGATAGCAGTAGAGGAAGCTAGTTTTCGAGTCATCGCATATAGTGTTAACGCTCGCGAAATGCTAGGCCTCACTCCCCAATCCGTTCCTAACCTCGAAAAGCCAGAAATTCTCACAATCGGTACCGATGTGAGGAGTTTATTCACCCAATCTAGCGTACTTTTACTCGAGAGAGCATTTAGGTCTCGAGAAATCACCTTGTTGAATCCAGTGTGGATTCATTCGAAGAATTCTGGGAAACCATTTTACGCAATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCTAGGACTGAGGATCCTGCCCTGTCGATTGCCGGGGCAGTGCAGTCTCAGAAACTAGCGGTTCGAGCTATTTCCCAGCTGCAATCACTTCCAGGTGGTGATGTTAAACTCTTGTGTGATACTGTGGTTGATTGTGTTAGGGAGCTTACTGGTTATGATCGAGTTATGGTATTTAAATTCCACGAAGACGAGCATGGAGAGGTTGTTGCAGAAAGCAAGAAGTCGAATTTAGAACCATATATTGGATTACACTATCCGGCAACTGACATTCCTCAGGCTTCAAGGTTTCTCTTCAAGCAGAATCGGGTAAGGATGATCGTCGACTGCCATTCGACGCCTGTTCGTGTCATTCAGGACGAAGGATTAGTGCAACCCTTATGTTTGGTCGGTTCGACCTTAAGAGCTCCCCATGGTTGTCATGCTCAATACATGGCTAATATGGGTTCTGTCGCTTCATTAGCAATGGCAGTCATTATCAACGGTAATGATAACGAAACGGGTGGTGGCCGAAACTCGACAAGGCTCTGGGGTTTGGTTGTCTGCCACCATAATTCGGCTCGGTGCATCCCCTTCCCGCTCCGTTATGCTTGCGAGTTTCTAATGCAGGCGTTTGGACTGCAACTGAATATGGAACTCCAGCTGGCCTCGCAGTTATCAGAAAAACATGTTTTGAAAACTCAAACTCTTTTGTGCGATATGATTCTTCGAGATTCGCCAGCCGGAATTGTTACTCAAAGTCCGAGTATTATGGATTTAGTGAAATGTGACGGGGCAGCACTTTACTACCAAGGGAAGTGTTATATACTAGGAGTGACCCCGACCGAAGCACAAATAAAAGATATCGCAAATTGGTTGTTGGCTTTTCATGGAGATTCGACCGGGCTAAGTACCGACAGCTTAGCCGAGGCTGGCTACCCTGGAGCAGCATTGCTCGGCGATGCAGTTTGTGGAATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTCTTCTGGTTTCGATCTCACACAGCCAAAGAGATCAAGTGGGGTGGAGCAAAGCATCATCCGGACGACAAAGACGATGGTCAGAGAATGCATCCACGCTCTTCGTTCAATGCCTTTCTAGAAGTCGTAAAAAGCCGGAGTTTGCCTTGGGAGAATGCGGAGATGGATGCTATTCATTCGCTGCGGCTTATTCTCCGAGACTCATTCAAAGACACCGAATTCAACAACTCAAAGGCAGTTATAGATGCCCTTCCCAAGAATCTCGAAATGGAAAGGTTGGATGAGCTCAGTTCAGTTGCCAGAGAAATGGTTAGGTTGATTGAAACTGCTACTGCCCCCATTTTTGCTGTAGATGTCAATGGTCGAATAAATGGATGGAACGCGAAGGTTGCAGAGTTGACCGGATTTCCAGTGGAAGAGGCTATGGGTAAATCCTTGGTCCAAGATCTCATATATAAGGAATCTGAAGAAACCGTCGAGAAACTTCTTCAACGAGCTTTGAGAGGCGAAGAAGACAAGAATGTAGAGATAAAATTGAAGATGTTTGGCTCAGAACAACATAAACGGCCCATTTTTGTCGTAGTCAATGCATGCTCAAGCCGGGATTACACAGACAATGTCGTCGGAGTTTGTTTTGTTGGTCAGGATGTTACCGACCAAAAAGTTGTTATGGATAAGTTCATTAACATACAAGGAGATTACAAGTCTATAATTCACAGTCCGAACCCTTTGATCCCTCCCATATTTGCCTCGGACGACAACACATACTGCTCGGAGTGGAATACTGCTATGGAAAACCTCACCGGCTGGTCAAAAGGGGATATTGTCGGAAAAATATTGGTTGGAGAGGTCTTTGGCGGTTGTTGTCGGCTCAAGGGTTCGGATGGACTAACGAAATTTATGATTGTCTTACACAACGCCATCGGAGGAAATGATACCGACAAATTTCCGTTTTCATTTTTCAACCGGAACGGGAAATATGTGCAGGCCCTTTTAACTGCAAACAAGAGGGTCGACATGAAGGGTAATATCATTGGAGCTTTCTGCTTCTTACAGATGGTAAGTCCTGAATTACAGCAAGCCCTTAAAGTCCAGAGGTTGCAGGAGAAGAGATGCGTGGCAAGGATGAAAGAGCTTGCCTATATTTGTCAAGAAGTCAAAAATCCTTTTAATGGAATTCGATTTACTCGTTCACTTTTGGAAGCTACGGAATTAACTGAAGATCAAAAGCAGTTTTTGGAGATAAGCACCGCTTGCGAGAAGCAGATGTCGAAGATTATGAAAGATGTGGATTTGGAAAGCATCGACGACGGCCCATTGGAGCTCGAGAAGTCGGAGTTCTTGCTCGGGAGTGTCATTGATGCTGTTGTTGGCCAAGTAATGATAGCAGTTAGAGAAAGAAACTTGCTGCTAATTCGAGATATTCCGGAAGAAGTAAAAAGTCTCGGAGTTTATGGTGATCAAGTCAGAATTCAACAAGTTCTGACCGATTTTCTGTTGAATATGGTGCAATATGCGTCTTCTCCGGATGGTTGGGTTGAGATTCGAGTATGTCCAAGCTTGAAGCAAATCTCAGAGGGACTCACTCTTGTGCATAATGAATTCAGGATTTTGTGCTCGGGCGACGGACTTCCCCCGGAATTGGTACAAGACATGTTTCATAGCAGCAGATGGGTGACTCGAGAAGGCCCCGGATTGAGCATATGTTGTAAGATTTTGAAGCTCATGAACGGGCAAGTCCAGTACATCAGAGAGTCAGGAAAACTGTTGCTTCCTAATTACTTTTGA	3357	45.52	MASGSNTAQSDHQQGQSSNANTSNTVVLRSESVSKAIAQYTVDARLHAVFEQSGKSGKCFDYSQSLKTSTQSVPEQQITAYLSNIQRGGRIQPFGCMIAVEEASFRVIAYSVNAREMLGLTPQSVPNLEKPEILTIGTDVRSLFTQSSVLLLERAFRSREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVDCVRELTGYDRVMVFKFHEDEHGEVVAESKKSNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHSTPVRVIQDEGLVQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVIINGNDNETGGGRNSTRLWGLVVCHHNSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLKTQTLLCDMILRDSPAGIVTQSPSIMDLVKCDGAALYYQGKCYILGVTPTEAQIKDIANWLLAFHGDSTGLSTDSLAEAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPDDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLRLILRDSFKDTEFNNSKAVIDALPKNLEMERLDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVAELTGFPVEEAMGKSLVQDLIYKESEETVEKLLQRALRGEEDKNVEIKLKMFGSEQHKRPIFVVVNACSSRDYTDNVVGVCFVGQDVTDQKVVMDKFINIQGDYKSIIHSPNPLIPPIFASDDNTYCSEWNTAMENLTGWSKGDIVGKILVGEVFGGCCRLKGSDGLTKFMIVLHNAIGGNDTDKFPFSFFNRNGKYVQALLTANKRVDMKGNIIGAFCFLQMVSPELQQALKVQRLQEKRCVARMKELAYICQEVKNPFNGIRFTRSLLEATELTEDQKQFLEISTACEKQMSKIMKDVDLESIDDGPLELEKSEFLLGSVIDAVVGQVMIAVRERNLLLIRDIPEEVKSLGVYGDQVRIQQVLTDFLLNMVQYASSPDGWVEIRVCPSLKQISEGLTLVHNEFRILCSGDGLPPELVQDMFHSSRWVTREGPGLSICCKILKLMNGQVQYIRESGKLLLPNYF	1118

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	51314368	51318348	-	Bma024580.1	Bma06g01466	84968

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bma06g01466	1118	Gene3D	PAS domain	769	881	-	-
Bma06g01466	1118	PIRSF	Phytochrome_conventional	13	1114	IPR012129	GO:0006355\|GO:0009585\|GO:0009881\|GO:0017006\|GO:0042803
Bma06g01466	1118	Pfam	GAF domain	230	407	IPR003018	GO:0005515
Bma06g01466	1118	ProSiteProfiles	Histidine kinase domain profile.	904	1118	IPR005467	-
Bma06g01466	1118	CDD	HATPase_Phy-like	1008	1111	IPR044767	-
Bma06g01466	1118	SMART	HisKA_10	897	961	IPR003661	GO:0000155\|GO:0007165
Bma06g01466	1118	SMART	pas_2	755	825	IPR000014	-
Bma06g01466	1118	SMART	pas_2	624	691	IPR000014	-
Bma06g01466	1118	PRINTS	Phytochrome signature	437	457	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	555	573	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	244	263	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	522	541	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	718	735	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	625	641	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	329	350	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	644	659	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	144	166	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	PRINTS	Phytochrome signature	738	758	IPR001294	GO:0006355\|GO:0009584
Bma06g01466	1118	CDD	HisKA	897	953	IPR003661	GO:0000155\|GO:0007165
Bma06g01466	1118	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	1009	1110	IPR003594	-
Bma06g01466	1118	SUPERFAMILY	GAF domain-like	415	592	-	-
Bma06g01466	1118	Gene3D	PAS domain	84	332	-	-
Bma06g01466	1118	SUPERFAMILY	PYP-like sensor domain (PAS domain)	770	873	IPR035965	-
Bma06g01466	1118	ProSiteProfiles	PAS repeat profile.	622	693	IPR000014	-
Bma06g01466	1118	Pfam	His Kinase A (phospho-acceptor) domain	901	961	IPR003661	GO:0000155\|GO:0007165
Bma06g01466	1118	SUPERFAMILY	PYP-like sensor domain (PAS domain)	627	736	IPR035965	-
Bma06g01466	1118	ProSiteProfiles	PAS repeat profile.	756	808	IPR000014	-
Bma06g01466	1118	CDD	PAS	633	740	IPR000014	-
Bma06g01466	1118	PANTHER	TWO-COMPONENT HISTIDINE KINASE	9	1111	-	-
Bma06g01466	1118	PANTHER	PHYTOCHROME	9	1111	-	-
Bma06g01466	1118	ProSitePatterns	Phytochrome chromophore attachment site signature.	329	338	IPR013516	-
Bma06g01466	1118	Gene3D	-	412	585	IPR043150	-
Bma06g01466	1118	SMART	gaf_1	229	417	IPR003018	GO:0005515
Bma06g01466	1118	Gene3D	PAS domain	615	750	-	-
Bma06g01466	1118	Pfam	Phytochrome region	420	594	IPR013515	GO:0006355\|GO:0009584
Bma06g01466	1118	Pfam	PAS fold	80	196	IPR013654	GO:0006355
Bma06g01466	1118	Pfam	PAS fold	756	875	IPR013767	GO:0006355
Bma06g01466	1118	Pfam	PAS fold	625	740	IPR013767	GO:0006355
Bma06g01466	1118	TIGRFAM	sensory_box: PAS domain S-box protein	629	744	IPR000014	-
Bma06g01466	1118	MobiDBLite	consensus disorder prediction	1	24	-	-
Bma06g01466	1118	SMART	HKATPase_4	1009	1118	IPR003594	-
Bma06g01466	1118	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	972	1110	IPR036890	-
Bma06g01466	1118	SUPERFAMILY	PYP-like sensor domain (PAS domain)	85	199	IPR035965	-
Bma06g01466	1118	CDD	PAS	767	875	IPR000014	-
Bma06g01466	1118	SUPERFAMILY	GAF domain-like	209	404	-	-
Bma06g01466	1118	ProSiteProfiles	Phytochrome chromophore attachment site domain profile.	229	397	IPR016132	-
Bma06g01466	1118	Coils	Coil	675	695	-	-
Bma06g01466	1118	Gene3D	-	210	568	IPR029016	-
Bma06g01466	1118	Gene3D	-	937	1113	IPR036890	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bma05g00993	Bma06g01466	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bma06g01466	Bma-Chr6:51314368	Bma14g00963	Bma-Chr14:10979022	0	dispersed
	Bma05g00993	Bma-Chr5:48415383	Bma06g01466	Bma-Chr6:51314368	0	wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bma06g01466	K12121		-	zju:107418995	1879.76