Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01480 ATGTCGTTGAGACCCAATGCCAGGACTGAGGTTCGTCGGAACCGCTACAAGGTCGCCGTCGATGCCGAAGAGGGTCGCCGGAGAAGGGAGGATACTACGGTCGAGATCCGCAAAATCAAGCGCGAAGAAAGCTTGCAGAAGAAGCGCCGTGAAGGTCTTCAGGCTCAGCAGTTACCTAACGCTGCTCAGGCTTCAGTACTGGAGAAGAAGTTAGAGAGCCTTCCTTCAATGGTTGCTGGGGTCTGGTCTGACAACAGTAGCTTGCAGCTGGAGGCGACTACGCAGTTTCGGAAATTGCTTTCCCTTGAACGAAGCCCTCCAATTGAGGAAGTTATTCAATCTGGGGTTGTTCCTCGATTTGTGGAGTTTCTTGTCAGGGAGGATTTTCCGCAAATTCAGTTTGAGGCTGCTTGGGCTCTCACGAACATTGCCTCTGGTACGTCAGAGAACACAAAGGTGGTAATTGATCATGGAGCAGTTCCTATCTTCGTAAAGCTCCTTGGTTCCCCAAGTGATGATGTCAGAGAGCAGGAAAGACTCACTTTATTACATTTAAATAGGGCAGTTTGGGCATTGGGAAATGTTGCTGGCGATTCACCTCGATGCCGTGATCTTGTCCTTGGCCATGGAGCCTTGATTCCTCTATTAGCTCAATTGAATGAGCATGCTAAACTTTCTATGTTGAGAAATGCCACATGGACACTGTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCCTTTGATCAGAATTTTCATATGATGATTGGATTATCTTGTCAATTTTGGATTTGGCAGGTGAAGCCAGCACTTCCGGCTCTTGAGCGTCTTGTTCACTCAAATGATGAAGAAGTCCTGACTGATGCTTGCTGGGCGCTTTCTTATCTTTCTGATGGAACTAATGATAAAATTCAAGCAGTTATTGATGCGGGTGTTTGTCCCCGACTTGTGCAGCTACTCCTACATCCATCTCCTTCTGTGCTTATTCCAGCATTACGTACAGTGGGAAATATTGTGACTGGTGATGATGTTCAGACTCAGTGGATAATTAACAATGGTGCACTACCGGCCCTTCTGAGCCTTTTAACCCACAGTCATAAAAAGAGCATAAAGAAGGAAGCATGTTGGACGATCTCAAATATTACTGCTGGAAACAGAGAACAGATACAGTGTGTAATTGAAGCTGGGTTAGTTCCTCCCTTAGTTAATTTGCTTCTAAATGCTGAGTTTGATATAAAGAAAGAGGCTGCATGGGCACTTTCGAATGCAACATCTGGTGGTACTAATGAGCAAATTAAATATCTGGTCGATCAAGGATGTATAAAACCACTATGTGATCTTCTTGTATGCCCTGATCCAAGGATCGTCACAGTCTGTTTGGAAGGGTTAGAGAATATTTTAAAGGTTGGGGAAGCTGACAAGGCTTTGGTTAGTGCTGGAGATGTGAATTTGTATGCCCAGTTGATTGATGATGCCGAGGGTTTAGAGAAGATTGAAAATCTTCAGAGTCATGATAACAATGAGATTTATGAGAAGGCAGTCAAACTACTGGAAACATACTGGTTGGAGGAGGAAGATGAGACAGAGACACTAGCCACAACTGAAGGTGGTAATCAGTCCAGCTTCCGCTTTGGGGAAAACCAGCAACCAGTTCCGTCTGGGGGATTCAATTTCAGCTGA 1677 45.44 MSLRPNARTEVRRNRYKVAVDAEEGRRRREDTTVEIRKIKREESLQKKRREGLQAQQLPNAAQASVLEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSLERSPPIEEVIQSGVVPRFVEFLVREDFPQIQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQERLTLLHLNRAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQNFHMMIGLSCQFWIWQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDVQTQWIINNGALPALLSLLTHSHKKSIKKEACWTISNITAGNREQIQCVIEAGLVPPLVNLLLNAEFDIKKEAAWALSNATSGGTNEQIKYLVDQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKALVSAGDVNLYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKLLETYWLEEEDETETLATTEGGNQSSFRFGENQQPVPSGGFNFS 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51396762 51400361 + Bma024592.1 Bma06g01480 84982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01480 558 PANTHER IMPORTIN SUBUNIT ALPHA 2 544 - -
Bma06g01480 558 Gene3D - 11 50 IPR036975 GO:0006606
Bma06g01480 558 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Bma06g01480 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 299 339 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 104 145 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 256 297 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 384 424 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 427 467 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 341 382 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 147 197 IPR000225 GO:0005515
Bma06g01480 558 SMART arm_5 198 240 IPR000225 GO:0005515
Bma06g01480 558 MobiDBLite consensus disorder prediction 531 558 - -
Bma06g01480 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 352 395 IPR000225 GO:0005515
Bma06g01480 558 PANTHER IMPORTIN ALPHA 2 544 - -
Bma06g01480 558 SUPERFAMILY ARM repeat 6 525 IPR016024 -
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 427 465 IPR000225 GO:0005515
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 199 240 IPR000225 GO:0005515
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 147 177 IPR000225 GO:0005515
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 300 338 IPR000225 GO:0005515
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 341 382 IPR000225 GO:0005515
Bma06g01480 558 Pfam Armadillo/beta-catenin-like repeat 269 296 IPR000225 GO:0005515
Bma06g01480 558 MobiDBLite consensus disorder prediction 526 558 - -
Bma06g01480 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 268 310 IPR000225 GO:0005515
Bma06g01480 558 Gene3D - 72 521 IPR011989 -
Bma06g01480 558 Coils Coil 22 42 - -
Bma06g01480 558 PIRSF Importin_alpha 2 557 IPR024931 GO:0005737|GO:0006606|GO:0061608
Bma06g01480 558 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Bma06g01480 558 Pfam Atypical Arm repeat 482 532 IPR032413 -
Bma06g01480 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 430 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01480 K15042 KPNA5_6; importin subunit alpha-6/7 - vvi:100248248 884.019
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00920 Bma06g01480 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01480 Bma-Chr6:51396762 Bma13g00609 Bma-Chr13:14414101 0 dispersed
Bma02g00920 Bma-Chr2:48515532 Bma06g01480 Bma-Chr6:51396762 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01480 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0