Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01485 ACAATGGCAATAGTCACTTGTGAGATAGAGGTGACTTCCTCTATTCCCCCGGCCAAGATGTTCAAAGCCTTCGTTCTCGACGCCCATATCGTCTTCCCCAAAATTGTCCCTCACGCAATCAAGTTTGTCGAAATACTTGGCGATGGGGGCCCGGGATCCATCAAAATGTTCACTTTCGGCGAAAGTATTTATGATCTCTCCATAGATTTTCCGCAGCAAAAGTTGACGATAATTGGGTGGGCAGATCCAGAAAAGATAATTAAAGCTATTAAAAAGACGAGGAAGATCGCCACCATTTGTTCCCACACAGAGCAAACTTCAGACCCTCCCCAACAAGCACCCACAGAAGGAAGCCCGCCGGCTTCTGAAGCAACAACTCAAACAGATGGTGGCCAACCAGAGACCGCTCCTGCTTCTGCGCCTGCGCCTGCCCCTGCCCCTGCGCCAGCGCCAGCGCCAGCTCCTGCGCCAGCGCCTGCGCCAGCGCCTGCGCCAGAACCACCAAAAGACCCACCGCCTGAACGTCCACAAGCGGAACCATCTCCATCACCGTCTCCGGTGCCTACAGCTGCTAGCCATCCAAACCAACCAGCACAAACCTCCGAACCAAAAGAAATCGGAGAAGTCCACGTAATACACCACCATCCTCCGGACTACGGCAACCTGTACGGCGGCTATGGTGGACAATGGAACAAATACCATAATTCGGCCGGACAAGGATTTCAATACGAACCACCATCCCCGCCAATCTACGTCACACATAGCTACAACACTTACCAGCCCTCACCCAGCGTAACCCAATACGAGTATGTCCGACCATCTCCGATAATCTCAGAATTCGAATATCTACGGTCACTGGAAAACCCATCTTATTACAGTAGGACGGATCGCTACAGTGAAGAATACAGCAACGGAAACGGCGTAAATGTTAACATTACCTCAATTTTCAGCGACGAGAACCCAAATGCATGCAAAATTATGTAG 984 51.02 TMAIVTCEIEVTSSIPPAKMFKAFVLDAHIVFPKIVPHAIKFVEILGDGGPGSIKMFTFGESIYDLSIDFPQQKLTIIGWADPEKIIKAIKKTRKIATICSHTEQTSDPPQQAPTEGSPPASEATTQTDGGQPETAPASAPAPAPAPAPAPAPAPAPAPAPAPAPEPPKDPPPERPQAEPSPSPSPVPTAASHPNQPAQTSEPKEIGEVHVIHHHPPDYGNLYGGYGGQWNKYHNSAGQGFQYEPPSPPIYVTHSYNTYQPSPSVTQYEYVRPSPIISEFEYLRSLENPSYYSRTDRYSEEYSNGNGVNVNITSIFSDENPNACKIM 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51418306 51421402 + Bma024597.1 Bma06g01485 84987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01485 327 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 62 327 IPR045181 GO:0046872
Bma06g01485 327 MobiDBLite consensus disorder prediction 138 191 - -
Bma06g01485 327 PANTHER OJ1116_C07.8 PROTEIN 62 327 - -
Bma06g01485 327 MobiDBLite consensus disorder prediction 102 203 - -
Bma06g01485 327 MobiDBLite consensus disorder prediction 102 134 - -
Bma06g01485 327 Gene3D - 1 80 IPR023393 -
Bma06g01485 327 SUPERFAMILY Bet v1-like 5 62 - -
Bma06g01485 327 PRINTS Major pollen allergen Bet V1 signature 4 24 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bma06g01485 327 PRINTS Major pollen allergen Bet V1 signature 27 37 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bma06g01485 327 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01485 - - - zju:107433222 196.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01485 Bma-Chr6:51418306 Bma05g00349 Bma-Chr5:10745309 1.86E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005312 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01485 Bma_Chr06 FPKM 26.674892 29.118305 26.415405 26.298456 21.752432 24.335901 23.914457 30.71542 28.075325 27.984188