Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01490 ATGTGCGGCGGAGCCATCATTTCTGACTTCATCGAAGCCAAGCGTGGCCGGAAGCTCAGCGCCAAGGAACTCTGGTCTGAGCTCGACCCACTCGGCATCGGATTTCTGTCCTCCGATGGAAACCATGAACTCAACGACGCGGTGAGGGGGAAGACTGACCGACAGAGGATAAAGAGACCGAGCCAGAGAAGTCGGAAGAACGTTTACCGGGGAGTCAGACGGAGGCCATGGGGTAAATGGGCTGCTGAAATTCGAGACCCGTCTAAGGGCGTCCGGGTCTGGCTCGGAACCTACAACACGGCAGAACAGGCAGCCGCAGCTTATGATGAGGCTGCCAAACGAATCAGAGGCAAAAAAGCCAAGCTCAACTTTCCACAATCACTGCCGAGTCCGTCGCCGTGGCCTCCTCTACGCCCACCGCTAGAAAACCGGCTCCCGGCGTCACACCCGGAAGTTCCGCTTGCCCAAGCGACAGGTTGGGCACCGTCCTATAACAGTTACAGTTGTTCAATGAAGAGTGAGGGAGGTAGTGACTCAGAGCTGAAAGATCGAATCTCGACCTTAGAGTCGTTCTTGGGTCTGGATAAAAAACAGCCATCGCCGCCAGCTCCACCGCCGCCAACTGAACCGCTGGGTGGATGCGATGAGTGGGACTCGTTAGTGGGGCTTTGGGATCTGATTCTGGACGACCCCTTCGCGCATATAATCTGCAACAACACGACCGACTGA 729 56.38 MCGGAIISDFIEAKRGRKLSAKELWSELDPLGIGFLSSDGNHELNDAVRGKTDRQRIKRPSQRSRKNVYRGVRRRPWGKWAAEIRDPSKGVRVWLGTYNTAEQAAAAYDEAAKRIRGKKAKLNFPQSLPSPSPWPPLRPPLENRLPASHPEVPLAQATGWAPSYNSYSCSMKSEGGSDSELKDRISTLESFLGLDKKQPSPPAPPPPTEPLGGCDEWDSLVGLWDLILDDPFAHIICNNTTD 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51441363 51442200 - Bma024602.1 Bma06g01490 84992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01490 242 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Bma06g01490 242 CDD AP2 69 124 IPR001471 GO:0003700|GO:0006355
Bma06g01490 242 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Bma06g01490 242 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Bma06g01490 242 Pfam AP2 domain 68 117 IPR001471 GO:0003700|GO:0006355
Bma06g01490 242 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Bma06g01490 242 PANTHER DNA-BINDING DOMAIN 52 133 IPR044808 GO:0003700|GO:0009873
Bma06g01490 242 MobiDBLite consensus disorder prediction 192 214 - -
Bma06g01490 242 PANTHER EREBP TRANSCRIPTION FACTOR 52 133 - -
Bma06g01490 242 MobiDBLite consensus disorder prediction 48 67 - -
Bma06g01490 242 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Bma06g01490 242 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01490 K09286 EREBP; EREBP-like factor - vvi:100249982 173.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01490 Bma-Chr6:51441363 Bma10g00712 Bma-Chr10:10841758 2.68E-35 dispersed
Bma06g01490 Bma-Chr6:51441363 Bma10g00671 Bma-Chr10:9686133 6.02E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g146 . . . . . . . . Cmo08g01215 . Cma06g01543 Cma14g01606 . Car14g01425 . . . . . . . . . . Cla06g00460 Cam06g0491 Cec06g0494 Cco06g0493 Clacu06g0477 Cmu06g0478 Cre06g1251 Cone14ag0033 Cone15ag0034 Cone11ag0474 Cone18ag1036 . Csa06g01779 Chy11g01533 . . . . . . Bpe13g00674 . Bma06g01490 Sed09g0260 . Cmo14g01642 Cma08g01242 . Car08g01117 . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla05g00674 Cam05g0740 Cec05g0747 Cco05g0747 Clacu05g0733 Cmu05g0698 Cre05g0772 Lsi09g01454 Csa03g01492 Chy06g00730 Cme11g02037
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002900 0 2 0 1 1 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 3 2 2 2 2 2 2 3 2 1 55
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57545 PF00847 AP2 1.10E-14 CL0081 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01490 Bma_Chr06 FPKM 12.656546 12.772141 7.424107 8.059969 7.1563 6.823267 7.210003 7.775321 8.58054 8.032138