Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01499 ATGGAGCCTCCATATCCTTCCTCCCACTCTTACAATTCCTCGATGAAAATGAAGATTCCTGCCTCGCATCATTCCGATATTGACCGTAGTTCGTCTGAACTGCGCGCATTGGATTGTAACCTCACCTCTCTCTGCGATCACATCCAAATGGAAGGCTTCAACTCCGGGGCTTTCTCTGATATTGTGGTTCACGCAGCAGGATCCACCTACCATCTCCATCGCTTAATTCTATCCCGTAGCTCCTACTTCCGGAACATGCTTCATGGGCCTTGGAAAGAAGCTACTTCTCCTGTAGTAACCTTGCATGTGGATGATAAGAATGTTAATGGGGAGGCAATTGCAATGGCTTTGGCTTATATGTATGGACATCAACCAAAGCTAACAGACAATAATGCATTTCGAGTTCTGGCTGCTGCTTCCTTTCTTGACCTTCAGGACTTGTGTGGGATATGCACGGACTTCATTATAGCTGAATTGTGGACTTCAAATTTTTTAGAATATCAGGTTTTTGCCGAAAACCAAGACTATGGCGTACATGGAGACCGTGTGAGAAATGCTTGTTGGGGTTATCTTTGTCAAAGCGGTGCCATGGAATTGAAAGAGGTGGTTCCAAAACTTTCAGCTCAAACTTTGCATGCCTTGCTGACATCAGATGAATTGTGGGTATCTAGTGAAGAAAAAAGATTTGAATTGGCACTTCATACATTCCTTATTAAAGGGTCTCTTTCCAAGTCAGAAAATTCCAAACCAGGAGGGTGTAGTTTTGAGTCAGGATCTGAAACTCTTTCTGAAGCTTCTAAGGCAAAAGATATATTTTTGATTGATAGCTGCAATAATACGGGGTTGGAGTCTGAACTGGGACATTTAAGTTTGAAGGATAGCTTTATGCTTTTAAGTCAGAGGGTGCAAGAAATTGGTTCTGATACATGCAAAAATTGTTGCCTCACAAGCATGATGTGCGCTTGCAGACTGCCTTATGGCTTTTCTCGTGGAGTTGAATCCACAGGATACTACGTAAATGAGCCTGGCCAGAACAATTCTGGTAACTTGGGAAATATATATGTTACAGATTCTGTGCCAGGTGAAACTAATGGCCTTTTCAGACCTGTGCGAGTGCATGTTAGGGGACCTGTTGAAGGACTAGCAGGAATTGGACGTGGAACAACATTTGTGCCAGCAAGTGCTTGGCCTCCAACACGGTTTGTTTTTTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTCTCAGCCATCTCTTGCTAATGATGATTCAGATGCAAGAACTGATCTCAATGGCGAGTTATCTGGTGATGGTTTGACTGCTTTAGTTGGGCTAAGCCAAGGAGGGACTAGCTCAGCTGCTGTCCAGGGAGAGCAGACAGAAAGAGGATATGAGATTGATAATCAAAGCAGAGTACTTGGAGCCTCTGTGGCTGGACCAAGTACCTCTGGTATTCCTATGCAGATACAACAGTCACCAGAGCATCCCCTTGGAATTGAATGGGAAAGCGGGAGCAGTTCTATATCTCTGGACGTGAGAACGCCTTTGAGCCACTTTCCTCCTTTTCGCTTTGGAGTGCAATTTGAGTATGTGCACAGGCTTGGTGATGGCCAAGTCAAGCACTCACCAGAATTTTTTTATGCTGGCTCTTTATGGAAGATTAGTGTTCAGGCTTTTGGTGATGAAGATCCTCAAGGAAGACGAACTCTTGGTTTATTTCTTCACAGACGAAAAGCAGAGACAATCGATCCTCATAGAAAGGTAAATTTCGTAATGTATGTCGATTCCCGTGAAAAGGTTACGGCTCGATATCAGTTGATTTGTCCTTCAAAGAGAGAAGTCTTGGTGTTTGGGAACTACAAGCAAACAGGAACTCTTTTACCAAAAGCACCTAAAGGATGGGGGTGGAGAACGGCCATTTTATTCGACGAGCTCATCGATCTGCTCCAAAATGGCTGCCTACGAGTGGCTGCAGTCGTACAGCTCGTCTAA 1992 44.23 MEPPYPSSHSYNSSMKMKIPASHHSDIDRSSSELRALDCNLTSLCDHIQMEGFNSGAFSDIVVHAAGSTYHLHRLILSRSSYFRNMLHGPWKEATSPVVTLHVDDKNVNGEAIAMALAYMYGHQPKLTDNNAFRVLAAASFLDLQDLCGICTDFIIAELWTSNFLEYQVFAENQDYGVHGDRVRNACWGYLCQSGAMELKEVVPKLSAQTLHALLTSDELWVSSEEKRFELALHTFLIKGSLSKSENSKPGGCSFESGSETLSEASKAKDIFLIDSCNNTGLESELGHLSLKDSFMLLSQRVQEIGSDTCKNCCLTSMMCACRLPYGFSRGVESTGYYVNEPGQNNSGNLGNIYVTDSVPGETNGLFRPVRVHVRGPVEGLAGIGRGTTFVPASAWPPTRFVFSRVPFGMGNRNSQPSLANDDSDARTDLNGELSGDGLTALVGLSQGGTSSAAVQGEQTERGYEIDNQSRVLGASVAGPSTSGIPMQIQQSPEHPLGIEWESGSSSISLDVRTPLSHFPPFRFGVQFEYVHRLGDGQVKHSPEFFYAGSLWKISVQAFGDEDPQGRRTLGLFLHRRKAETIDPHRKVNFVMYVDSREKVTARYQLICPSKREVLVFGNYKQTGTLLPKAPKGWGWRTAILFDELIDLLQNGCLRVAAVVQLV 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51475565 51480686 - Bma024611.2 Bma06g01499 85001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01499 663 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 518 662 IPR008974 GO:0005515
Bma06g01499 663 SUPERFAMILY POZ domain 53 156 IPR011333 -
Bma06g01499 663 SUPERFAMILY TRAF domain-like 530 661 - -
Bma06g01499 663 CDD MATH 535 661 IPR002083 GO:0005515
Bma06g01499 663 Gene3D Potassium Channel Kv1.1; Chain A 28 193 IPR011333 -
Bma06g01499 663 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 296 663 - -
Bma06g01499 663 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 10 265 - -
Bma06g01499 663 MobiDBLite consensus disorder prediction 413 433 - -
Bma06g01499 663 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 10 265 - -
Bma06g01499 663 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 296 663 - -
Bma06g01499 663 ProSiteProfiles BTB domain profile. 59 129 IPR000210 GO:0005515
Bma06g01499 663 Pfam BTB/POZ domain 53 157 IPR000210 GO:0005515
Bma06g01499 663 SMART BTB_4 59 159 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01499 - - - qsu:111988508 583.563
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g301 . . . . . . . . . . . . . . Sed12g0842 Cpe08g00182 . Bhi01g01020 Tan10g1013 Cmetu06g1851 . Hepe05g1444 . . . . . . . . . . . . Cone4ag0148 . . . . . . . . . . . Bma06g01499 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010984 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57546 PF00651 BTB 6.80E-15 CL0033 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01499 Bma_Chr06 FPKM 0.118457 0.0 0.0 0.0 0.182391 0.22558 0.119491 0.0 0.082872 0.0