Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01505 ATGGCGATGAATGAGCGAAAAACTATTGACTTAGACCAAGGATGGGATACTATGCAAAAGGGTATTACCAAGCTGAAAAACATTCTAGAGGGATTGCCTGAGCCGCAGTTTAACTCGGAGGACTATATGATGCTCTACACAACCATCTATAATATGTGTACTCAAAAACCTCCGCATGATTACTCCCAGCAACTGTATGATAAATACCGTGAATCTTTTGAAGAGTACATTACATCAACGGTGTTGCCATCTTTGAGGGAGAAGCATGATGAGTTTATGTTAAGAGAGCTTGTGAAAAGGTGGGCAAATCATAAAGTGATGGTTAGGTGGCTTTCTCGCTTCTTCTATTATCTTGATCGATATTTTATTGCTCGGAGATCTCTTCCGCCCCTTAATGAAGTTGGACTCACTTGCTTCCGCGAACTGGTTTATCAGGAGTTAAATGGCAAAGCCCGAGATGCTGTTATTTCTCTGATTGATCAAGAACGTGAAGGAGAGCAGATTGACCGAGCTCTTCTGAAAAATGTGTTAGACATATTTGTTGAGATTGGAATGGGGCAAATGGAATATTATGAAAATGACTTCGAGGCGGACATGCTTAAGGACACTGCTGCTTATTACTCACGAAAAGCTTCAAACTGGATTCTCGAAGATTCCTGCCCCGATTATATGCTAAAGGCCGAGGAGTGCTTAAAACGGGAAAAAGATAGAGTTTCACATTATTTGCACTCAAGCAGCGAGCAAAAGTTACTTGAGAAAGTTCAGCATGAGTTGTTGTCTGTATATGCAACCCAACTGCTTGAAAAAGAGCATTCTGGTTGCCATGCTTTACTCAGAGATGACAAGGTGGAAGATCTTTCAAGAATGTTCAGACTATTTTCTAAAATTCCTAGAGGATTAGATCCCGTTTCCAATATTTTTAAGCAGCATGTCACTGCCGAAGGAACAGCCTTGGTTAAACTGGCAGAAGACGCTGCAAGCAATAAAAGGGTAAGTGTAACAGAAACTGATTTAGGTTGTGATTTTCAGGTTTTTGTAAGAAAGGTTATCGAACTGCATGACAAATATCTAGCATACGTGAACGACTGCTTTCTAAATCATACTCTTTTTCACAAGGCTCTCAAAGAGGCTTTTGAGGTCTTCTGTAACAAAGGTGTTGCTGGAAGTTCAAGTGCGGAACTACTCGCTACTTTTTGTGATAACATTCTTAAGAAAGGTGGAAGTGAGAAGCTGAGTGATGAGGCCATTGAGGACACACTTGAGAAGGTCGTTAAGTTACTTGCTTATATTAGTGACAAGGACCTGTTTGCCGAATTCTACCGAAAAAAGCTAGCACGACGCCTTCTTTTTGATAAGAGTGCTAATGATGATCATGAGAGAAGTATTTTGACAAAATTGAAGCAGCAATGTGGTGGTCAGTTCACCTCAAAGATGGAGGGAATGGTCACAGATTTGACTCTAGCAAGGGAGAATCAAACCAGCTTTGAGGAATATCTCAGTCACAACTCTCATGCAAATCCTGGGATTGACTTGACAGTTACTGTCCTGACCACTGGCTTCTGGCCTAGCTACAAGTCTTTTGATCTTAACCTTCCTGCAGAGATGGTCAAGTGTGTCGAAGTTTTCAGGGAATTTTATCAAACAAAAACGAAGCACAGGAAACTTACATGGATATACTCACTGGGTACTTGTAACATCATTGGGAAATTCGAACCAAAAACCATTGAATTGATTGTGACAACCTATCAGGCTTCTACTCTTCTACTATTCAACTCTGCAGACAGATTAAGTTATTCCGAAATCACGACACAATTGAACTTGAGTGACGACGATGTTGTTAGACTACTACATTCTTTGTCATGCGCAAAATATAAAATTCTTAACAAGGAGCCGAACACCAAAACCATTTCGCCTACTGATTTCTTCGAGTTTAACTCAAAATTTACAGACAAAATGAGAAGGATAAAGATTCCTCTCCCTCCTGTGGATGAGAAGAAGAAAGTAATTGAAGACGTGGACAAGGATCGACGGTATGCGATCGATGCTTCAATTGTGCGCATAATGAAGAGCAGAAAAGTTTTGGGTCATCAGCAGCTGGTGATGGAGTGCGTCGAGCAATTGGGTCGGATGTTCAAGCCTGATTTCAAGGCGATCAAAAAGCGGATCGAAGATCTGATCACTCGAGACTATTTGGAACGGGACAAAGATAACCCGAACATGTTCAGGTACTTGGCATGA 2238 41.02 MAMNERKTIDLDQGWDTMQKGITKLKNILEGLPEPQFNSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRELVYQELNGKARDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMEYYENDFEADMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEQKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKRVSVTETDLGCDFQVFVRKVIELHDKYLAYVNDCFLNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSHNSHANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNIIGKFEPKTIELIVTTYQASTLLLFNSADRLSYSEITTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDFFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPNMFRYLA 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51512871 51517641 - Bma024618.1 Bma06g01505 85007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01505 745 Pfam Cullin protein neddylation domain 675 737 IPR019559 -
Bma06g01505 745 SMART cul_2 421 570 IPR016158 -
Bma06g01505 745 Gene3D Cullin Repeats 3 141 - -
Bma06g01505 745 ProSitePatterns Cullin family signature. 718 745 IPR016157 GO:0006511|GO:0031461|GO:0031625
Bma06g01505 745 Gene3D Cullin Repeats 267 390 - -
Bma06g01505 745 Gene3D Cullin; Chain C, Domain 2 508 661 - -
Bma06g01505 745 SUPERFAMILY Winged helix DNA-binding domain 660 745 IPR036390 -
Bma06g01505 745 Gene3D Cullin Repeats 142 263 - -
Bma06g01505 745 SUPERFAMILY Cullin repeat-like 11 386 IPR016159 -
Bma06g01505 745 Pfam Cullin family 25 648 IPR001373 GO:0006511|GO:0031625
Bma06g01505 745 Gene3D - 662 745 IPR036388 -
Bma06g01505 745 SMART Cullin_Nedd8_2 672 739 IPR019559 -
Bma06g01505 745 PANTHER CULLIN 3B 3 744 - -
Bma06g01505 745 Gene3D Cullin Repeats 391 505 - -
Bma06g01505 745 SUPERFAMILY Cullin homology domain 389 658 IPR036317 -
Bma06g01505 745 PANTHER CULLIN 3 744 IPR045093 -
Bma06g01505 745 ProSiteProfiles Cullin family profile. 390 620 IPR016158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01505 K03347 CUL1, CDC53; cullin 1 - rcu:8262419 1402.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g01038 Bma06g01505 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01038 Bma-Chr5:48944562 Bma06g01505 Bma-Chr6:51512871 0 dispersed
Bma06g00693 Bma-Chr6:36964709 Bma06g01505 Bma-Chr6:51512871 2.11E-08 dispersed
Bma06g01505 Bma-Chr6:51512871 Bma14g01429 Bma-Chr14:27281006 1.56E-124 dispersed
Bma06g01505 Bma-Chr6:51512871 Bma14g00944 Bma-Chr14:10746038 7.66E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g309 . . . Bda08g00287 . . . Bma05g01038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01532 . . . Blo07g00176 Bda11g00530 . Bpe05g00840 Bpe13g00660 . Bma06g01505 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001518 2 4 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 3 2 2 7 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01505 Bma_Chr06 FPKM 12.628852 11.232637 9.97287 12.778299 21.928205 18.624184 16.361906 66.129707 73.311485 70.634926