Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01509 ATGGCCCCATCAAGAAAATCTGCTAGTGTGAATAAGCGTTTTACTTATGTGAATGAGGTTACTAGTAATAAACATGGAGAAAATGTAACCAAAAGCAAGCAAAAGAAGCGGAAGTTCTCTGATATGCTAGGGCCTCAATGGCACAAGGAGGAGCTTGAGCGATTTTATGAAGCATATCGAAAACATGGGAAGGATTGGAAAAAGGTGGCAGCTGTTGTACGTAATCGGACTTTTGAAATGGTTGAGGCCCTTTACACCATGAATAGGGCTTACTTATCACTTCCAGAGGGCACTGCTTCAGTGGTTGGTCTCGTAGCCATGATGACTGATCACTATTGTGTACTGGGAGGAAGCGAGAGCGAACAAGAAAGCAATGAGGGTTCTGGAGCATTACAGAAACCACAGAAGCGAACTCGAGGAAAACTGCAGAATAGCATCTCTAAGAGATCAGGTGGACCTGTTGACGATGTAATTGAATCCCAATCACTTGCATCGGCTTACGGTTGCATGTCACTTTTGAAGAAGAGGCGTTCTGGAATTAAACCACATGCTGTTGGAAAGAGGACTCCTCGTGTTCCCGTTTCTTATTCGTACGAGAAAGAGAGAGAAAAATATTTTTTGCCAGCCAGGTTAGGCTCAAAGCTAAAGGGACATGCAAACAATGACGATGATTATGCCCGTGAAATAGCATTGGCATTAACAGAGGCTTCACAAAGAGATGATTCTCCTCAACTTTCTCAAACACCCAATAAGAAATCTGAAGTGCCTTCGCCTGTTCAGAATGGTGAAAGGATGAGAAGTGAATCAGAAATGACCAGTTTCAAACTCCGGTGTGGTGAAATGGATGAAGGCGGTTGTGAATTGAGCTTAGGAAGTACAGGGGGTGATGATGCAGATTATGACAGGGGGAAAAAGAATTATGCGGGTGCAGTTGAGCTCCCAAAGAAGGGTAAGCGGTTTAGTGTAAAGAAGCAAGAAGCTGAAGAATGTAAGAACAATAATTTGGATGACCTAAAGGAAGCATGTAGTGGGACAGAAGAAGGGCAAAAGTTGGATGCTTTTGAGAGAAGACTAGAAGTATATGACATGGATGTAGAAATGGCTAGATCCTCTTCAAAAGGCCTGAGGAAACGTAGTAAAAAAGCTCTATTCGTAGGGGACGGTGGATCAGCCTTTGATGCTCTGCAAACACTAGCAGATTTGTCTTTGATGATGCCAGAAACAACTGTTGACACTGAGTCATCTGGCATGGTCAAGGGAGAACACTTTAATACCAAGGACAAGTCTAAAATGAAAGGAAACCATTCCATCACTGGACCTGAAACTGCTGCTTGCAAAACAAATAAACTGGGAAAAGATTTTGACCACACTGTTGATGCTTCTACTGTAACAAAGGCGGGACTTGATCAGTCTAGTACTGGCACTCGCAAACGAAAACTGAAGCCCTCACCATCTAAGGCTAAAGATCAAGTAAAGAAGTCTATTAATAAAGGTAAACGATCCTCTCATCCTGCTGGACCCGCCAAGGCTGGGAAATGGGTAAAAAATTCAGAACACCCATCTTTGGATACTGGGCATGTAAAGGAAGAAAATGAGGCACCAATTCCGTCTGAAAACCTGATTAGCTTAATTACAAAGATTAGGAAAAGAAGGAAGTCGGACTTGCCAAAGCCGCATATTCAGAAGGAATCAATTGTTTCTGAAAATATTGCAGTTGGCCAACCAAAGGAACCCGTTATTTCTTCCCATGATAAAACGCTTGTTCTTAAGGAAAAACTTTTAAATTGCCTATCTTGGTACCAATTGCGGAGATTGTGTACTTTTGAGTGGTTCTACAGTGCAATTGACTATCCATGGTTTGCTAAATGTGAGTTTGTAGAGTACTTGAATCATGTTGGATTGGGCCACGTTCCTAGATTAACTCGTGTTGAATGGGGGGTCATTCGAAGTTCCCTTGGAAGGCCACGCAGATTTTCTGAGCAATTTTTGAAAGAGGAAAAACAGAAGCTTGATCAGTATCGAGAATCTGTTAGAAAACATTATGCTGAACTTCGTTCTGGGACCAGAGAAGGACTTCCAAATGATTTAGCCAAGCCTTTATACGTCGGACAACGTGTTGTTGCTATACACCCAAGTACAAGGGAGGTCCACGACGGAAGCATTTTGACAGTTGACTACAGCAGGTGCAGGGTTCAGTTTGACCTTCCTGAACTTGGTGTTGAGTTTGTTTCGGATATTAATTGCATGCCACTAAATCCATTTGAAAACATGCCTGCATCTGTTACAAGGGAGAGCTTCTCATTGGATAAAATTTTTGGGATTGGGAATCTCAATGATTACAAGATTACTGTGCAACAAAAAGAGGGAAAGATTGATGATCATATGAAGTCTTTCCCGAATGAGAAACTGAAAAGCGCGGATGGTACAGTGCACAACTCTCCTTCAGCTCATAACATCAGCAAAATATTAAACCCGGCAAAGGTTTTTCTTCTGCTGATTCTTGAATATGGAAAATATTCTTGTTTTAATATGTACGGAATTATTTTTCGCCAGGAGGAGATACCTTTCCCTAGTTCACCATCCAAATCGGGGTTAAGTGAGAGGACTAATAGTCAACTTACAACTAATCCCCAGTTCTCTGTATTTGCGCAAATCCAAGCAAAAGAAGCTGACATTCAAGCTCTATCTGAGTTAACCCGTGCACTTGACAAGAAGGAAGCTGTGGTGTCTGAATTGAGACAAATGAATGATGAGGTATTGGAAAATCAAAAAAATGGAGACAGCTTACTCAAGGACTCAGAAAATTTTAAGAAGCAATATGCAGCTGTGCTTCTGCAGTTAAATGAAGTTTCTTCAGCTCTGTTTTGCTTAAGACGGCGAAATACATATCAAGGGGCACCAGCTATGTTGTTGAAGCCGCTGTCTGATTTAAGTGATCCTAATCTTCTTACTCAAGAACCTGCCGGATCTCATGTAGGTGACATTGTTGGACTTTCAAGAATAAGTGCACGAACAATGGTTGATGCAGCTATGAAGGCTGTTTCAACTCTGAGAAAAAGGGGTGATAATTTTGAGAGTATCGAGGATGCCATAGATTTTGTAAACAATAGACTTTCAGAAAATGATTGTGCTTTACCATCCGAGAAATCTACGACTGCAGATACAAGCCAGGCCAATTTGGCCACTCATAATCCTATGAATCTAAAAAATACATTAGCAATTGGAGATTTTGAAGATCCTAAGAGATTTGGTTCACTCGATCATAATGACGTAGAGATCCCTTTAGAACTTATAGCTCACTGTGTAGCTACTTTACTGATGATTCAGAAGTGTACAGAACGGCAGTTTCCGCCAGCTGATGTTGCTCGGGTATTAGATTCAGCTGCTACTAGTTTGCAGCCCCGATGTTCTGAGAACCTCCCGATATATGCAGAAATACAGAAATGCATGGGAATTATTAGAAGCCAGATACTTGCCCTCATTCCCACTTGA 3492 41.58 MAPSRKSASVNKRFTYVNEVTSNKHGENVTKSKQKKRKFSDMLGPQWHKEELERFYEAYRKHGKDWKKVAAVVRNRTFEMVEALYTMNRAYLSLPEGTASVVGLVAMMTDHYCVLGGSESEQESNEGSGALQKPQKRTRGKLQNSISKRSGGPVDDVIESQSLASAYGCMSLLKKRRSGIKPHAVGKRTPRVPVSYSYEKEREKYFLPARLGSKLKGHANNDDDYAREIALALTEASQRDDSPQLSQTPNKKSEVPSPVQNGERMRSESEMTSFKLRCGEMDEGGCELSLGSTGGDDADYDRGKKNYAGAVELPKKGKRFSVKKQEAEECKNNNLDDLKEACSGTEEGQKLDAFERRLEVYDMDVEMARSSSKGLRKRSKKALFVGDGGSAFDALQTLADLSLMMPETTVDTESSGMVKGEHFNTKDKSKMKGNHSITGPETAACKTNKLGKDFDHTVDASTVTKAGLDQSSTGTRKRKLKPSPSKAKDQVKKSINKGKRSSHPAGPAKAGKWVKNSEHPSLDTGHVKEENEAPIPSENLISLITKIRKRRKSDLPKPHIQKESIVSENIAVGQPKEPVISSHDKTLVLKEKLLNCLSWYQLRRLCTFEWFYSAIDYPWFAKCEFVEYLNHVGLGHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKQKLDQYRESVRKHYAELRSGTREGLPNDLAKPLYVGQRVVAIHPSTREVHDGSILTVDYSRCRVQFDLPELGVEFVSDINCMPLNPFENMPASVTRESFSLDKIFGIGNLNDYKITVQQKEGKIDDHMKSFPNEKLKSADGTVHNSPSAHNISKILNPAKVFLLLILEYGKYSCFNMYGIIFRQEEIPFPSSPSKSGLSERTNSQLTTNPQFSVFAQIQAKEADIQALSELTRALDKKEAVVSELRQMNDEVLENQKNGDSLLKDSENFKKQYAAVLLQLNEVSSALFCLRRRNTYQGAPAMLLKPLSDLSDPNLLTQEPAGSHVGDIVGLSRISARTMVDAAMKAVSTLRKRGDNFESIEDAIDFVNNRLSENDCALPSEKSTTADTSQANLATHNPMNLKNTLAIGDFEDPKRFGSLDHNDVEIPLELIAHCVATLLMIQKCTERQFPPADVARVLDSAATSLQPRCSENLPIYAEIQKCMGIIRSQILALIPT 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51535529 51544315 - Bma024622.1 Bma06g01509 85011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01509 1163 CDD SANT 47 77 IPR001005 -
Bma06g01509 1163 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1163 IPR028306 -
Bma06g01509 1163 MobiDBLite consensus disorder prediction 118 150 - -
Bma06g01509 1163 Gene3D - 4 99 - -
Bma06g01509 1163 MobiDBLite consensus disorder prediction 465 530 - -
Bma06g01509 1163 SMART sant 43 91 IPR001005 -
Bma06g01509 1163 SUPERFAMILY Homeodomain-like 43 90 IPR009057 -
Bma06g01509 1163 PANTHER LIN-9 1 1163 IPR010561 GO:0006351|GO:0017053
Bma06g01509 1163 MobiDBLite consensus disorder prediction 237 267 - -
Bma06g01509 1163 Pfam Myb-like DNA-binding domain 46 77 IPR001005 -
Bma06g01509 1163 Coils Coil 895 922 - -
Bma06g01509 1163 SMART DIRP_2 611 712 IPR033471 -
Bma06g01509 1163 MobiDBLite consensus disorder prediction 412 443 - -
Bma06g01509 1163 Pfam DIRP 610 711 IPR033471 -
Bma06g01509 1163 Coils Coil 663 683 - -
Bma06g01509 1163 MobiDBLite consensus disorder prediction 234 269 - -
Bma06g01509 1163 MobiDBLite consensus disorder prediction 118 154 - -
Bma06g01509 1163 MobiDBLite consensus disorder prediction 420 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01509 - - - bhj:120080265 1377.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01509 Bma-Chr6:51535529 Bma14g01332 Bma-Chr14:24681521 9.23E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57547 PF06584 DIRP 4.60E-31 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01509 Bma_Chr06 FPKM 5.148825 5.013319 4.545763 3.821958 2.80811 2.085911 2.401015 1.667883 1.916287 1.220153