Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01512 ATGGAACGTTACGGTGGGGATACGGAGAAGTCGCCTGCCGATCTGCAGCCTGAATGGACCTCTCATAAATCCGAAACCGGGCTAGAGGAGCCTCTGTGGCGGTTGGGACTGGGAGGGGAGGAGTCTTACCCGGAGCGACCTGACGAGGCCAACTGTATCTATTACTTACGTACGGGGGTTTGTGGGTACGGTTCGCGTTGCCGATTCAATCATCCCCCTCGCAATGTGGTGATTTCTGGATCTGCTAGACATGAGGGAGGGAAGTACCCAGAGCGAATAGGCCAACACGAATGCCAGTACTACATGAAGACTGGGATGTGTAAATTTGGATTGTCTTGTAAATATCACCATCCGAGGCAGGGAGGTGGTTCCGTTGGCTATGTTTCGGTCTTACTAAATTACTATGGATACCCATTACGGCCGGTCTGCTCTTTCTCTTCATCACAGGCGAAAGAGGAATGCTCTTATTATGCCAAAACGGGCTCGTGCAGTTTTGGTTCCACATGCAAATTCCATCATCCACAGCCTGTTGGCATGCAGCCTCCAGCCCCATCACCAGCTATGTATCCTCAAATGCAGTCTCCATCTATTCCTTCTTCACAGCAGTATGGAGTAGTAGTAGCTGGAAGGCCATCTTTGCTTCCTAGCTCGTATATCCATACATCTATGAGCCAAGTTGCACCTCCGTCTCCTAGCACTCAACCTTTAATTGATTCAGGAACATTATTCGGTGTAACACAACTTACTCCTGCACCTGCATATACTGGATCATACCAACCGATGCCTTCTTCTGCTGGTCCGTCGCTTGGTAACCAGATATTTCCCGACAGACCTGACCAACCAGAGTGTCAGTATTACTTGAGAACAGGGAATTGTAAATTTGGATCTTCTTGTAAATACCATCATCCACTGGAATTAGCTGCTCCTAAAACAGATATTTTTCACGGCTTTTCAGGTCTTCCTCTTCGCCCGGGTGCAGCACTTTGTACTCACTTTCTACAAAATGGGTTCTGTAAGTTTGGCTCAGCCTGTAAATTTGACCATTCCTTGGAAACACTTGATGGTAGCCCCCATTGGTTGTCTCTTTCTATTTTTTCGGCTGCCCCATTGTCCTCATCTTCAGAGTTTGGGCCCCAACTCAACACCTGA 1149 48.13 MERYGGDTEKSPADLQPEWTSHKSETGLEEPLWRLGLGGEESYPERPDEANCIYYLRTGVCGYGSRCRFNHPPRNVVISGSARHEGGKYPERIGQHECQYYMKTGMCKFGLSCKYHHPRQGGGSVGYVSVLLNYYGYPLRPVCSFSSSQAKEECSYYAKTGSCSFGSTCKFHHPQPVGMQPPAPSPAMYPQMQSPSIPSSQQYGVVVAGRPSLLPSSYIHTSMSQVAPPSPSTQPLIDSGTLFGVTQLTPAPAYTGSYQPMPSSAGPSLGNQIFPDRPDQPECQYYLRTGNCKFGSSCKYHHPLELAAPKTDIFHGFSGLPLRPGAALCTHFLQNGFCKFGSACKFDHSLETLDGSPHWLSLSIFSAAPLSSSSEFGPQLNT 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51579673 51582023 + Bma024625.1 Bma06g01512 85014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01512 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 376 - -
Bma06g01512 382 PANTHER PROTEIN PHOSPHATASE RELATED 14 376 - -
Bma06g01512 382 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Bma06g01512 382 SMART c3hfinal6 149 175 IPR000571 GO:0046872
Bma06g01512 382 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Bma06g01512 382 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Bma06g01512 382 SMART c3hfinal6 323 350 IPR000571 GO:0046872
Bma06g01512 382 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Bma06g01512 382 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
Bma06g01512 382 SUPERFAMILY CCCH zinc finger 95 119 IPR036855 GO:0046872
Bma06g01512 382 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Bma06g01512 382 SUPERFAMILY CCCH zinc finger 281 305 IPR036855 GO:0046872
Bma06g01512 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 119 IPR000571 GO:0046872
Bma06g01512 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 175 IPR000571 GO:0046872
Bma06g01512 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 303 IPR000571 GO:0046872
Bma06g01512 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Bma06g01512 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 326 349 IPR000571 GO:0046872
Bma06g01512 382 Gene3D - 274 357 - -
Bma06g01512 382 Gene3D - 44 125 - -
Bma06g01512 382 ProSiteProfiles Zinc finger C3H1-type profile. 97 120 IPR000571 GO:0046872
Bma06g01512 382 SUPERFAMILY CCCH zinc finger 151 175 IPR036855 GO:0046872
Bma06g01512 382 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Bma06g01512 382 ProSiteProfiles Zinc finger C3H1-type profile. 323 351 IPR000571 GO:0046872
Bma06g01512 382 MobiDBLite consensus disorder prediction 1 27 - -
Bma06g01512 382 Gene3D - 144 194 - -
Bma06g01512 382 SUPERFAMILY CCCH zinc finger 326 353 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01512 - - - tcc:18603462 449.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00483 Bma-Chr3:3752240 Bma06g01512 Bma-Chr6:51579673 4.90E-15 dispersed
Bma06g01512 Bma-Chr6:51579673 Bma13g00044 Bma-Chr13:499466 1.59E-122 dispersed
Bma05g01061 Bma-Chr5:49311291 Bma06g01512 Bma-Chr6:51579673 1.86E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g338 . Blo12g00022 . . . . . . . . Cma06g01483 Cma14g01634 Car06g01276 Car14g01459 Sed02g1209 Cpe08g00200 Cpe03g01375 Bhi01g00972 Tan10g0977 Cmetu06g2468 . Hepe05g1466 . Lcy11g1433 . . . . . . . Cone14ag0775 Cone15ag0782 . . Lsi05g01521 . . Cme06g00709 . Blo07g00181 . . . Bpe13g00654 . Bma06g01512 . Cmo06g01479 Cmo14g01672 . . . . . . . . . . . . . Cla05g00632 Cam05g0692 Cec05g0702 Cco05g0698 Clacu05g0686 Cmu05g0654 Cre05g0725 . Csa03g01433 Chy06g00673 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021419 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57550 PF00642 zf-CCCH 4.90E-09 CL0537 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01512 Bma_Chr06 FPKM 1.918487 2.570036 2.667022 1.94921 2.202784 3.096116 2.809571 4.05204 4.749261 3.868083