Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01520 TTGAATCAGGCAACTCCCAGTGGGATCTCAAATCTGAAATCAGTTTCGCTTCCAGTGAATGGGAAAATCTTTCCAAATCTCAGAATGCATGTACCCAGGGGCCGCTTACAGATTTGCTGTGCGGCCAAACCTGAGACAGTGGACAAAGTCTGTGAAATAGTGAGGAAGCAGCTAGCTTTACCTGATGATTCTGCTGTCACCGGGGAGTCCAAGTTTGCCTCACTTGGGGCTGACTCTCTCGATACGGTTGAGATTGTGATGGGCCTTGAAGAAGAATTCGGAATCAGCGTGGAGGAAGAAAGTGCCCAAAGCATTGCCACCGTCCAGGATGCGGCGGACCTGATTGAGAAGCTCATTGGGAAGTAG 366 49.73 LNQATPSGISNLKSVSLPVNGKIFPNLRMHVPRGRLQICCAAKPETVDKVCEIVRKQLALPDDSAVTGESKFASLGADSLDTVEIVMGLEEEFGISVEEESAQSIATVQDAADLIEKLIGK 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51625625 51626654 + Bma024633.1 Bma06g01520 85022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01520 121 TIGRFAM acyl_carrier: acyl carrier protein 45 117 IPR003231 GO:0006633
Bma06g01520 121 SMART Phosphopantetheine attachment site 47 101 IPR020806 GO:0031177
Bma06g01520 121 SUPERFAMILY ACP-like 44 119 IPR036736 -
Bma06g01520 121 Hamap Acyl carrier protein [acpP]. 45 119 IPR003231 GO:0006633
Bma06g01520 121 Pfam Phosphopantetheine attachment site 48 115 IPR009081 -
Bma06g01520 121 Gene3D - 42 121 IPR036736 -
Bma06g01520 121 PANTHER ACYL CARRIER PROTEIN 6 120 IPR044813 GO:0000036|GO:0006633
Bma06g01520 121 ProSitePatterns Phosphopantetheine attachment site. 74 89 IPR006162 -
Bma06g01520 121 PANTHER ACYL CARRIER PROTEIN 2, CHLOROPLASTIC-RELATED 6 120 - -
Bma06g01520 121 ProSiteProfiles Carrier protein (CP) domain profile. 44 119 IPR009081 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01520 - - - cpap:110819991 172.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01520 Bma-Chr6:51625625 Bma14g01280 Bma-Chr14:22529229 1.60E-44 dispersed
Bma06g01520 Bma-Chr6:51625625 Bma13g00381 Bma-Chr13:6952989 5.51E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g369 . . . . . Bpe14g01151 . . . Cmo17g00295 . . . . . . . . . . . . . . Cla06g00507 Cam06g0547 Cec06g0547 Cco06g0555 Clacu06g0533 Cmu06g0532 Cre06g1301 Cone14ag0788 Cone15ag0789 Cone7ag0182 Cone4ag0177 . . Chy11g01467 . Blo02g00577 Blo07g00190 Bda11g00543 . . Bpe13g00646 . Bma06g01520 . . . Cma08g01200 Cma17g00305 Car08g01078 Car17g00281 Cpe12g00257 Cpe17g00097 Bhi12g01745 . . . . . . . . . . . . . Lsi09g01393 . . Cme11g01973
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008190 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 0 35