Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01529 ATGGCTTCGATGGTTGCCAAGCCCAGTTGTAATAACAGTGCTCATTCTTCTTCTTCAATGACTGTCCAAGAAATCGGAAGTAGAAACAAGAGGAAATTTCGGGCTGATCCGCCTTTAGGTGACTTGAATAAGATTGATCCCTTATCTCAAAAGGAATGCTCTAGCTATGAGTTTTCGGCAGAGAAACCGGAAGTAATCTCAAGTCATGGGCACTCTAGTGCTTGTGATCTATGCAGTGTTCGCCAAGATCATTTTGATGGATTTAAACTTGATTTTGGATTATCCAATGGTGAAAATCCAAATGATGTCAACCCTAGGTGGCCTAGAGAGGACTTGGAGACAGATGAATTCCAAGATGCTGATTGGAGTGATTTTACCGAAGCTGAGCTGGAAGAACTTGTTTTGATTAATTTAAGCACCATTTTCAAGGGTGCAATCAAGAAAATTGTTGCTTGTGGCTACACTGAAGAAGCTGCAACAAAAGCTGTCTCAAGGTCTGGCATCAGTTATGGTAGTAAAGACACTGTGTCAAATATAGTGGATAATGGCTTGGTGTTTCTTAAAAGTGGGCAGGACATCGATTATTCAAGGGAACATCTCTTCGAAGATCTACAGCAACTGGAGAAATATATACTTGCAGAAATGGTTTGTGTTCTTCGAGAGGTTAGACCATTCTTCAGCAATGGGGATGCTATGTGGTGCTTATTAATATCCGACATGAATGTGTCTCATGCATGTGCAGTGGATGGTGATTTTTTTGGTACTTTGGTCACTGATGGGAATTCACCCACTCAGGTGTCGAAGAGCTCTGAGAATTCTAGTAAGACAAATCTTCCTATTACCTGTTCTCATAGCCCTCAATCTGAAGCCGCGGGATTTTCAAATAATTCAAAGTCAAAGAATTTGCTTGTTAATAGTGGACAGACAATGGATGAAGACGGCATTAACTCCACATCCGATAGTGTGGACAATAAACATTTTAGTGCAGTGGGTTCGTCTTCATTTGCATCTGAAGCGAAGCTTGGGAGCAGCAAAAAGTTTCAATCTAATACTGCTAAAAGGGAGTATATACTTCGGCAGAAATCACTTCATATGGAGAAAAACTATCGAACCTATGGATCTAAAGGATCTTCAAGAACAGGGAAGCTGAGTGGCATGGGTAGTTTGATCTTGGATAAGAAATTAAAGGCTGTTTCTCACCCTACATCAATAAATATAAAGAACGCTCCCTTAAAAATAAGGGAGGCGAATGGAATCGATGTTGGTCAAGATAATGAAAACCTTAATCTATCGACAGATGCTCTGTCCTCTTCTCATGTAGTATCAAACTTGGGAAGTCTTGATGCGATTCCTGGTTTTCTTACAAAAAATATACAACCTGAAGCTGAGATTTTACCAGCTGCTGATACTGAACTCTCTCTTTCTTTGCCAACAAAATGTGATACTGCTTCATTGCCCATTAGCTGCAATGAAACTTCTAATGTTGGTCATGCTGGGAGGCAATTTGACAAGTCTCTTAGGCGGTGGGTTCCTCACGAAAAGAAAGATGACATGATTCTAAAGCTGGTTCCTAGAGTGCGAGAACTACAAACTCAACTCCAAGAATGGAATGAGTGGGCCAATCAAAAGGTTATGCAAGCTGCTCGTAGACTCGGTAAGGATAAGACCGAACTTAAGACTCTAAGACAAGAGAAAGAAGAAGTTGAAAGGATGAAAAAGGAGAAGCAGACTCTGGAAGAAAATACAATGAAAAAGCTTTCGGAAATGGAAAATGCGTTGTGCAAGGCTAGTGGGCAGGTTGAATTAGCTAATTCTGCAGTTCGCAGGCTTGAGATAGAGAATGTTTCACTGAGGCGAGCGATGGAGGATGCAAAATTACGTGCTGCAGAATCTGCTGCTAACTGCCAGGAGGTATCAAAGAGAGAGAAGAAGACATTAATGAAATTTAAATCTTGGGAAAAACAGAAAACTGTGTTGCAGGAAGAACTCGTGGCTGAAAAACGCATACTAACGCAGCTGTTACTTGAACTAGAAGAAGCTAGCAATCTCCAGGAGCAGCAGGAGGCGAAATGGAAATTCGAAGAGCAAGCCCGACTTCAACTATTTACGCAAGTTACTTCGATTAGAAAGGAAAGAGAACAAATCGAGGCTTCGGTGGAAGAAAAGCAAGACATAATCAGACTAAAAGCAGAAAACAATCTTCAAAAGTACAAAGATGATATCCAAAAGCTAGAAAAAGAAATTTCCCAGCTGAGACGGAAGAGTGATTCTTCGAGAATTGCGGCCCTGAAAAGAGGAATCGACGGAAGCTATGCCAGCATACTTTCCGAGTCCAGAAATACCACCAGTCACAAGGAGACTCGGGACCGTAAATTGGCTTCGTCGATGAATAATCTCCAACCCCAATCGGGGACAGGATCGGTAAAACGAGAACACGAGTGTGTGATGTGCCTTACGGAGGAGATGTCCGTGGTTTTTCTGCCGTGTGCTCACCAGGTGGTCTGTAGAACCTGCAATGAACTTCATGAAAAGCAGGGAATGAAGGATTGCCCTTCGTGTCGGAGCCCCATACAGCAGCGAATTTCTGTACGTTTCGCTCGAGCTTAG 2607 42.12 MASMVAKPSCNNSAHSSSSMTVQEIGSRNKRKFRADPPLGDLNKIDPLSQKECSSYEFSAEKPEVISSHGHSSACDLCSVRQDHFDGFKLDFGLSNGENPNDVNPRWPREDLETDEFQDADWSDFTEAELEELVLINLSTIFKGAIKKIVACGYTEEAATKAVSRSGISYGSKDTVSNIVDNGLVFLKSGQDIDYSREHLFEDLQQLEKYILAEMVCVLREVRPFFSNGDAMWCLLISDMNVSHACAVDGDFFGTLVTDGNSPTQVSKSSENSSKTNLPITCSHSPQSEAAGFSNNSKSKNLLVNSGQTMDEDGINSTSDSVDNKHFSAVGSSSFASEAKLGSSKKFQSNTAKREYILRQKSLHMEKNYRTYGSKGSSRTGKLSGMGSLILDKKLKAVSHPTSINIKNAPLKIREANGIDVGQDNENLNLSTDALSSSHVVSNLGSLDAIPGFLTKNIQPEAEILPAADTELSLSLPTKCDTASLPISCNETSNVGHAGRQFDKSLRRWVPHEKKDDMILKLVPRVRELQTQLQEWNEWANQKVMQAARRLGKDKTELKTLRQEKEEVERMKKEKQTLEENTMKKLSEMENALCKASGQVELANSAVRRLEIENVSLRRAMEDAKLRAAESAANCQEVSKREKKTLMKFKSWEKQKTVLQEELVAEKRILTQLLLELEEASNLQEQQEAKWKFEEQARLQLFTQVTSIRKEREQIEASVEEKQDIIRLKAENNLQKYKDDIQKLEKEISQLRRKSDSSRIAALKRGIDGSYASILSESRNTTSHKETRDRKLASSMNNLQPQSGTGSVKREHECVMCLTEEMSVVFLPCAHQVVCRTCNELHEKQGMKDCPSCRSPIQQRISVRFARA 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51665417 51669017 - Bma024642.1 Bma06g01529 85031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01529 868 Coils Coil 551 588 - -
Bma06g01529 868 Pfam Zinc finger, C3HC4 type (RING finger) 811 859 - -
Bma06g01529 868 Coils Coil 727 761 - -
Bma06g01529 868 Pfam Family of unknown function (DUF6592) 138 248 IPR046527 -
Bma06g01529 868 Coils Coil 660 690 - -
Bma06g01529 868 Coils Coil 600 627 - -
Bma06g01529 868 ProSiteProfiles Zinc finger RING-type profile. 814 854 IPR001841 -
Bma06g01529 868 PANTHER OS05G0141500 PROTEIN 9 867 IPR046934 -
Bma06g01529 868 MobiDBLite consensus disorder prediction 1 46 - -
Bma06g01529 868 MobiDBLite consensus disorder prediction 778 806 - -
Bma06g01529 868 MobiDBLite consensus disorder prediction 1 26 - -
Bma06g01529 868 PANTHER OS05G0141500 PROTEIN 9 867 - -
Bma06g01529 868 SUPERFAMILY RING/U-box 808 860 - -
Bma06g01529 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 864 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01529 - - - vvi:100249384 1077.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00217 Bma-Chr12:2897022 Bma06g01529 Bma-Chr6:51665417 6.41E-31 transposed
Bma02g00865 Bma-Chr2:46768846 Bma06g01529 Bma-Chr6:51665417 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44