Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01535 ATGGGGTCTATTGAAAATGGAAAACTCGGAAAGAATGGAGAACGCATGAAGGAAGACGGAGTAGAGGAGCCCATATTAACGGAACAAATGCAGAGGTTTTGTATGTTTCCAATTAGGTATAAGCAACTTTGGGAGATGTACAAGAATGCCCAAGCCAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCTCAGGACGTGCAACACTGGGAAACGCTTTCTGCTCGAGCATTCTATGGATTGCAAATTGCAATGGAGAATGTTCATTCTGAGATGTATAGCTTGCTCTTGGAGACGTATATCAAAGATTCAATGGAGAAAACTAGATTGTTTAATGCGGTGGAAAACATTCCTTGTGTTGCTAGGAAGGCTAAATGGGCTTTGGATTGGATACATAGTTTTTGTGCCATATTTTGGCTCAAGAAGCGAGGATTGATGCCAGGTCTGGCATTTTCGAACGAGCTCATTTCTAGAGACGAGGGCCTTCATTGCGATTTTGCTTGCCTTCTCTATAGTTTGTTGCGGAACCAACTTCGGTGGGAAATCGTGTATCGAATTGTGGAGGAAGCTGTGGAAATAGAGACTCAATTTGTCTGTGATGTGCTAAATTGTGCATTAATCGGCATGAACTCGACGCTAATGAGCAAGTACATAAAGTTTGTAGCCGACCGACTTTTGGTGAGTCTTTTTCGATCCTTCTTAAGTGAGAAAAATGGAGATCATTTCTTGTTTTTATCTCAGGTTGCATTGGGATATCGGAGGAAGTACAATGTCGAAAATCCATTTGACTGGATGGAATTCATTTCTTTGCAAGGAAAGACAAACTTCTTTGAGAGAAGAGTGGGTGATTATCAAAAGGCCTCTGTAATGTCAACCCTCAAAGATGGTGGCTGCAATTTTGTGTTCAAGATGGATGAAGATTTCTAG 924 41.56 MGSIENGKLGKNGERMKEDGVEEPILTEQMQRFCMFPIRYKQLWEMYKNAQASFWTAEEVDLSQDVQHWETLSARAFYGLQIAMENVHSEMYSLLLETYIKDSMEKTRLFNAVENIPCVARKAKWALDWIHSFCAIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYSLLRNQLRWEIVYRIVEEAVEIETQFVCDVLNCALIGMNSTLMSKYIKFVADRLLVSLFRSFLSEKNGDHFLFLSQVALGYRRKYNVENPFDWMEFISLQGKTNFFERRVGDYQKASVMSTLKDGGCNFVFKMDEDF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51698405 51700731 + Bma024649.1 Bma06g01535 85037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN A 72 132 - -
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN A 1 73 - -
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 132 228 IPR000358 GO:0009263
Bma06g01535 307 MobiDBLite consensus disorder prediction 1 20 - -
Bma06g01535 307 CDD RNRR2 33 269 IPR033909 GO:0009263
Bma06g01535 307 Gene3D Ribonucleotide Reductase, subunit A 74 131 IPR012348 GO:0016491
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 247 307 IPR000358 GO:0009263
Bma06g01535 307 ProSitePatterns Ribonucleotide reductase small subunit signature. 84 100 IPR030475 -
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN A 247 307 - -
Bma06g01535 307 SUPERFAMILY Ferritin-like 16 285 IPR009078 -
Bma06g01535 307 Gene3D Ribonucleotide Reductase, subunit A 132 241 IPR012348 GO:0016491
Bma06g01535 307 Gene3D Ribonucleotide Reductase, subunit A 244 285 IPR012348 GO:0016491
Bma06g01535 307 Gene3D Ribonucleotide Reductase, subunit A 4 73 IPR012348 GO:0016491
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 72 132 IPR000358 GO:0009263
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 1 73 IPR000358 GO:0009263
Bma06g01535 307 Pfam Ribonucleotide reductase, small chain 73 131 IPR000358 GO:0009263
Bma06g01535 307 Pfam Ribonucleotide reductase, small chain 132 228 IPR000358 GO:0009263
Bma06g01535 307 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN A 132 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01535 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] - rcu:8261479 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00932 Bma-Chr1:9098615 Bma06g01535 Bma-Chr6:51698405 1.74E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00556 . . Bpe13g00627 . Bma06g01535 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002424 3 2 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 2 4 4 2 3 2 6 2 60