Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma06g01541 | ATGTCTCATATTGCTGTGGAGAGAAACAGACGAAGACAGATGAATGAACATCTCAAAGTTCTACGATCTTTAACCCCATGCTTCTACATCAAAAGGGGAGATCAAGCGTCGATAATAGCAGGGGTCATAGATTTCATCAAAGAGCTACACCAAGTTCTGCAATCGTTAGAGTCCAAAAAACGAAGGAACAGTCTAAGCCCTAGCCCTAATCCAAGTCCAAAGCCACAACAGTCAAATAACTCTCAGCTCGATCCTCCATTCGGGTCTGAAAGTACAAAGGAAATCGCAGGAGCAAGCTGCAACTCGGCCATTGCAGACGTCGAAGCAAGGATTTCTGGACCAAACGTGGTGTTGAAGATCATCTGCGGACGATTCCCCGGTCAACTCGTGAGGATTGTAAGCGTTTTAGAAAAACTCTCCTTTGAAATCCTCCATCTCAACATCAGTACCATGGAAGATACTGTTCTTTACTCTTTTCTCGTTAAGATAGGTCTGGAATGTGAGCTGAGCCTGGAAGAACTAGCTATGGAAGTTCAGCAAAGTTTTTCGTCTGAACACATCTACGTCAACAAAATTTAG | 579 | 43.7 | MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIAGVIDFIKELHQVLQSLESKKRRNSLSPSPNPSPKPQQSNNSQLDPPFGSESTKEIAGASCNSAIADVEARISGPNVVLKIICGRFPGQLVRIVSVLEKLSFEILHLNISTMEDTVLYSFLVKIGLECELSLEELAMEVQQSFSSEHIYVNKI | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 51761148 | 51763316 | - | Bma024658.1 | Bma06g01541 | 85043 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma06g01541 | 192 | Gene3D | - | 1 | 64 | IPR036638 | GO:0046983 | |
| Bma06g01541 | 192 | MobiDBLite | consensus disorder prediction | 75 | 93 | - | - | |
| Bma06g01541 | 192 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 49 | IPR011598 | GO:0046983 | |
| Bma06g01541 | 192 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 190 | IPR044283 | GO:0003700|GO:0010052 | |
| Bma06g01541 | 192 | Pfam | Helix-loop-helix DNA-binding domain | 2 | 49 | IPR011598 | GO:0046983 | |
| Bma06g01541 | 192 | PANTHER | TRANSCRIPTION FACTOR MUTE | 1 | 190 | - | - | |
| Bma06g01541 | 192 | SUPERFAMILY | ACT-like | 115 | 173 | IPR045865 | - | |
| Bma06g01541 | 192 | SMART | finulus | 4 | 55 | IPR011598 | GO:0046983 | |
| Bma06g01541 | 192 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 71 | IPR036638 | GO:0046983 | |
| Bma06g01541 | 192 | MobiDBLite | consensus disorder prediction | 58 | 93 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma06g01541 | Bma-Chr6:51761148 | Bma14g01995 | Bma-Chr14:43258483 | 1.51E-56 | dispersed | |
| Bma06g01541 | Bma-Chr6:51761148 | Bma08g00377 | Bma-Chr8:8479415 | 6.48E-59 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 57552 | PF00010 | HLH | 4.30E-08 | No_clan | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma06g01541 | - | - | vvi:100256370 | 268.855 |