Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01551 ATGGCAGAACCAGCATATACTGTTGCATCTGATAGTGACACCACTGGAGAAGAGAAGTCTTCGTCTGTTTTCCCGGAAATAGCTATAGGCATTGACATTGGCACTAATCAATGCAGTGTTGCAGTTTGGAATGGCTCTCAGGTGGAGCTTCTCAAGAACTCTAGAAACCAAAAGATGATGCGATCATATGTCTCCTTCAAGGACGATATTCCTTCTGGTGGAGCTGGAAATCAACTGGCCCACGAATATGAGATTCTATCCGGAGCTTCTATCTTCAACATAAAACGCCTTGTCGGAAGAGTTGACACTGATCCAGTCATCCATAAAAGCAAACGACTTCCATTTTTGGTACAAACTTTGGACATTGGGGTCCGTCCTTTTATCGCAGCTTTGGTAAACAACATTTGGAGGTCCACCACTCCAGAAGAAGTAATGGCCATTTTTCTTGTCGAACTAAGAGGAATGGCTGAGGCACAACTGAAACGGGCAGTGAGGAATGTTGTTTTGACAACTCCAGTTTGTTTCAGCCGGTTTCAGTTGACTCGTATTGAGCGAGCTTGTGCAATGGCTGGCCTTCATGTTCTTAGACTAATGCCTGAACCGACAGCTGTGGCCTTGTTATATGCACAGCAGCAGCAGGAGGAACAGACTGGAGATGATAGTATGGGCAGCGCAAGTGAGAAAATTGCTCTCATTTTTAATATGGGCGCTGGGTTCTGTGATGCGGCTGTAACAGCCACTGCTGGAGGAGTTTCACATATAAAGGCCTTGGCCGGAAGTCCTATTGGTGGAGAAGACATACTTCAGAATATGATGAGCTATCTCTTGCCGAATTCAGAGCTTCTTTTCTCAAACCATGGAGTTGACGAAATCAGATCGATGGGATTGCTTCGAGTCGCAACCCAGGATGCAATCCACAAACTCTCTGTCCAAAATAACGTTCAAATTGACGTCGAGATGGGAAATGGGTCTAAAGTTTGTAAGATTGTGGACAGGAGAGAGTTTGAGAATGTAAATGGTGACGTGTTTGGGGCATGTGAAAGCCTAGTAATGCGATGTTTGCGAGATGCAAAGGTGGGAATCGAAGATTTGGACGATGTGATAGTCGTGGGCGGTTGTTCGAACATTCCGAAGATAAAGAATATTCTACTTGGGTTGACTAAAAAAGAAAAGTTTTACGAAGGAATGAACCCATTTGAAGCTCCGGTAATTGGTGCTGCATTGGAAGGAGCGGTGGCCTCAGGTGTTAGTGATCCGTTTGGAAGTTTAGAAGTATTGACGATCCAAGCTACGCCACTAGATATCGGAATCAAAGCCGATGGAAGCAATTTTGTTCCTATTATACCGAAAAACACGACAATGCCGTCACGAAAAGACCTTATATTCACGACCAGCTACGATAATCAAAGTGAGGCAATACTTGTTGTCTACGAAGGGGAAGGAAAGACTATCGAAGAAAACCATCTTCTCGGCTATTTCAAGTTTGCTGGAATTCCCTCTGCACCCAAAGGCGTTCCAGAAATTAACATTTGCATGGACATTGATGCTTTGAATATGCTGAGAGTTTTAGTGGGTGTCATACTTCCGGGTTCTCAAATTCCGGCCTGCCCTGCAATGGAGGTCAGAATGCCGACAGTCGACGATGGACATGGCTGGTGTGCCCAAGCTTTGGCTGCAAAATACGGTTCGTCTCTCGACTTGATCGAAAAGCCGAAAAAGAAACCTATATGA 1731 44.89 MAEPAYTVASDSDTTGEEKSSSVFPEIAIGIDIGTNQCSVAVWNGSQVELLKNSRNQKMMRSYVSFKDDIPSGGAGNQLAHEYEILSGASIFNIKRLVGRVDTDPVIHKSKRLPFLVQTLDIGVRPFIAALVNNIWRSTTPEEVMAIFLVELRGMAEAQLKRAVRNVVLTTPVCFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQEEQTGDDSMGSASEKIALIFNMGAGFCDAAVTATAGGVSHIKALAGSPIGGEDILQNMMSYLLPNSELLFSNHGVDEIRSMGLLRVATQDAIHKLSVQNNVQIDVEMGNGSKVCKIVDRREFENVNGDVFGACESLVMRCLRDAKVGIEDLDDVIVVGGCSNIPKIKNILLGLTKKEKFYEGMNPFEAPVIGAALEGAVASGVSDPFGSLEVLTIQATPLDIGIKADGSNFVPIIPKNTTMPSRKDLIFTTSYDNQSEAILVVYEGEGKTIEENHLLGYFKFAGIPSAPKGVPEINICMDIDALNMLRVLVGVILPGSQIPACPAMEVRMPTVDDGHGWCAQALAAKYGSSLDLIEKPKKKPI 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51840576 51842306 + Bma024668.1 Bma06g01551 85053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01551 576 MobiDBLite consensus disorder prediction 1 20 - -
Bma06g01551 576 CDD HSP70_NBD 29 411 - -
Bma06g01551 576 SUPERFAMILY Actin-like ATPase domain 27 210 IPR043129 -
Bma06g01551 576 Gene3D - 92 147 - -
Bma06g01551 576 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 426 528 IPR029047 -
Bma06g01551 576 Gene3D - 213 393 - -
Bma06g01551 576 PANTHER HEAT SHOCK PROTEIN 70KDA 4 573 IPR013126 GO:0005524|GO:0140662
Bma06g01551 576 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 4 573 - -
Bma06g01551 576 Pfam Hsp70 protein 28 522 IPR013126 GO:0005524|GO:0140662
Bma06g01551 576 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 422 530 IPR029047 -
Bma06g01551 576 Gene3D Actin; Chain A, domain 4 264 345 - -
Bma06g01551 576 Gene3D - 29 411 - -
Bma06g01551 576 PRINTS 70kDa heat shock protein signature 505 521 - -
Bma06g01551 576 PRINTS 70kDa heat shock protein signature 167 187 - -
Bma06g01551 576 PRINTS 70kDa heat shock protein signature 424 443 - -
Bma06g01551 576 PRINTS 70kDa heat shock protein signature 55 67 - -
Bma06g01551 576 PRINTS 70kDa heat shock protein signature 396 416 - -
Bma06g01551 576 PRINTS 70kDa heat shock protein signature 364 380 - -
Bma06g01551 576 PRINTS 70kDa heat shock protein signature 27 40 - -
Bma06g01551 576 SUPERFAMILY Actin-like ATPase domain 227 412 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01551 K09489 HSPA4; heat shock 70kDa protein 4 - egr:104414844 878.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01551 Bma-Chr6:51840576 Bma06g01631 Bma-Chr6:52422748 0 dispersed
Bma06g01551 Bma-Chr6:51840576 Bma08g00994 Bma-Chr8:49032753 3.67E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01551 Bma_Chr06 FPKM 7.75325 8.425639 9.132051 8.805133 10.982982 10.164535 11.866348 8.237606 10.010002 9.884868