Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01552 ATGGGCAAGAAAGATCAGGAAGACAATGCCAGGGTCGAAGCTGTTTTAGAGATTCTCAGAAAACAAGCTCCGCTAACACTGAAACAGGAGAAGTTCTGTAATATTGGCTGTGTAGAGAGGTTTTTGAAGTGGAAGGGGGATAATGTGAAGAAGGCGGCGAAGCATTTAAGGGCTTGTCTCTCTTGGAGAGAGACCATTGGCATTGACCATTTGACAGCAGACGAGTTCTCGGTTGAGCTCGCAGAAGGCGTGGCTTACGTCGCCGGCCAAGATGAAGAAGGAAGACCAATCCTTATTTTCCGAATCAAGCAGGATTGCCAGAAGCTTCATTCCCAGAAATTCTTCACTCGTTTGCTGGTTTTTACACTGGAGGTAGCCATTGGAACAATGCCCAAAAATGGGGAGCAACTAGTAATCCTTTTCGATGCAAGCTTTTTCAGATCGGCGTCGGCTTTCATGAACTTGGTGCTTCCGACGCTGAAGATAATGGCCGAGTACTATCCAGGCCAGCTTTTCAAGTGCTTTATCATTGACCCACCTTCTCTCTTCTCCTATCTATGGAAGGGTGTCCGGCCGTTCGTTGAGCTATCGACGGCGACGATGGTAATATCTTCCCTAGATTTTGAAGATTCCTTAGAATTCAACGACTTCTCCGCCTACCCGCGAGCCTCCTCCCTCCGGTTCGATCAGAATTCAACGGCCAAGATCGGATTTTGCGCATCCACTCGCTTCTCATTCACCGTGTCCCACAATTTCGACTCTCTCAAGCCTTGGTATCTAAGCCTGACTGACACGTCAGCGTCGAAAGTGGGACCTACGACTCCCTCTTTACTGGGCCCCGCACTCATCTCGCCGCTCAACGCTCGGTCCTTCTCCTTCGCATCACCCGCCGCCAGAACTCCACGTGGAAGCATCAACGGTGGAAATTTGAGGAAAAGCTTTTTTCCGTCGACTCCGTTGCCACAGCGGGTGACCCCCATTCCGAGGACCCCAAGGCCATCGTTCCTCCAGTCGCCGGCAGTGTTCTTTCGGAGGGAAGGCCACGCCAGCAGAACGGAAAAGTGTAGAGATGCATTCTTGCCGTTTTTGAAATTCTATCGAAGGCCGTACGATGAAATGATATACAGGTCAAAGATGAGGCCCCCACTTGGTGGACTAATCTCCATCGTCTCTCCCCAACTTAAACGTCGCCACGTGTCTGTATCTCAACGGTTCTAA 1218 50.33 MGKKDQEDNARVEAVLEILRKQAPLTLKQEKFCNIGCVERFLKWKGDNVKKAAKHLRACLSWRETIGIDHLTADEFSVELAEGVAYVAGQDEEGRPILIFRIKQDCQKLHSQKFFTRLLVFTLEVAIGTMPKNGEQLVILFDASFFRSASAFMNLVLPTLKIMAEYYPGQLFKCFIIDPPSLFSYLWKGVRPFVELSTATMVISSLDFEDSLEFNDFSAYPRASSLRFDQNSTAKIGFCASTRFSFTVSHNFDSLKPWYLSLTDTSASKVGPTTPSLLGPALISPLNARSFSFASPAARTPRGSINGGNLRKSFFPSTPLPQRVTPIPRTPRPSFLQSPAVFFRREGHASRTEKCRDAFLPFLKFYRRPYDEMIYRSKMRPPLGGLISIVSPQLKRRHVSVSQRF 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 51843163 51845476 - Bma024669.1 Bma06g01552 85054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01552 405 SUPERFAMILY CRAL/TRIO domain 74 195 IPR036865 -
Bma06g01552 405 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 75 221 IPR001251 -
Bma06g01552 405 SUPERFAMILY CRAL/TRIO N-terminal domain 6 75 IPR036273 -
Bma06g01552 405 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 405 - -
Bma06g01552 405 Gene3D - 3 222 IPR036865 -
Bma06g01552 405 Pfam CRAL/TRIO domain 82 198 IPR001251 -
Bma06g01552 405 CDD SEC14 78 212 IPR001251 -
Bma06g01552 405 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 405 - -
Bma06g01552 405 SMART sec14_4 79 235 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01552 - - - qsu:112038137 653.669
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00854 Bma06g01552 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00787 Bma-Chr3:7265000 Bma06g01552 Bma-Chr6:51843163 1.09E-12 dispersed
Bma06g00125 Bma-Chr6:1692481 Bma06g01552 Bma-Chr6:51843163 9.03E-17 dispersed
Bma06g01552 Bma-Chr6:51843163 Bma06g01325 Bma-Chr6:50217117 7.20E-09 dispersed
Bma06g01630 Bma-Chr6:52419574 Bma06g01552 Bma-Chr6:51843163 0 transposed
Bma02g00854 Bma-Chr2:45748059 Bma06g01552 Bma-Chr6:51843163 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g489 . . . . . Bpe14g01183 . . . . Cma06g01415 . Car06g01220 . Sed02g1245 Cpe08g00256 . Bhi01g00819 Tan10g0850 Cmetu06g1818 . Hepe05g1545 . Lcy11g1540 . . . . . . . Cone14ag0845 . Cone7ag0246 Cone4ag0240 Lsi05g01598 . . Cme06g00614 Blo02g00543 Blo07g00215 Bda11g00573 . . Bpe13g00610 Bma02g00854 Bma06g01552 . Cmo06g01417 . . . . . . . . . . . . . . Cla05g00550 Cam05g0598 Cec05g0609 Cco05g0606 Clacu05g0596 Cmu05g0566 Cre05g0634 . Csa03g01337 Chy06g00584 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004551 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01552 Bma_Chr06 FPKM 0.592144 0.388895 0.717873 0.412613 0.616163 0.376535 0.542849 0.0 0.067249 0.201496