Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01573 ATGGTGCTTAGATCTGAAGAACAGAGCCAGCTACAGCTCGTTGAGCGTGAAGACATTGACGATGAAGAAGACCTTTTCGAAGCTATCGATAAACTAATTGCCCAGGGAATCAATGCCGGAGACGTGAAGAAGCTTCAAGACGCTGGAATTTACACCTGCAACGGCTTAATGATGCACACAAAGAAGAACTTGACAGGGATAAAAGGTTTATCTGAGGCCAAAGTTGATAAAATATGCGAAGCTGCTGAGAAGATCGTCAATTTTGGTTATATCACAGGAAGCGATGCTTTATTGAGAAGGAAGTCTGTGATTCATATCACGACAGGAAGCCATGCCCTTGATGAACTTTTAGGAGGTAGAGTGGAGCTGACACTGTGTATCATTGATTACAGATCAGGAAAAACTCAGCTTGCACATACTTTATGCGTCTCTACCCAGCTTCCAATCAACATGCGGGGAGGAAATGGAAAAATAGCTTACATAGACACTGAAGGAACTTTCCGTCCGGACAGAATTGTACCAATAGCAGAAAGATTTGGTATGGATCCTGGAGCGGTCCTCGACAATATCATTTATGCTCGTGCTTACACATATGAGCATCAATACAACCTCCTCCTTGGTCTAGCAGCCAAGATGTCTGAAGAACCATTTAGACTTCTGATCGTAGATTCTATTATTGCTCTTTTTCGAGTGGATTTCACAGGTAGAGGAGAACTTGCAGAGCGGCAGCAAAAACTGGCACAGATGCTTTCTCGATTAATTAAGATAGCTGAGGAATTTAACGTTGCAGTCTACATGACGAACCAAGTCGTAGCGGACCCAGGAGGAGGAGTATTTGTATCAGATCCAAAGAAACCAGCCGGAGGGCATGTACTTGCCCATGCCGCTACAATTAGGCTGATGTTTAGAAAAGGCAAAGGTGAACAACGCGTCTGCAAGGTGTTTGATGCCCCAAACCTGCCAGAATCTGAAGCAATATCCTTTCTAGTACCATAG 996 43.98 MVLRSEEQSQLQLVEREDIDDEEDLFEAIDKLIAQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYITGSDALLRRKSVIHITTGSHALDELLGGRVELTLCIIDYRSGKTQLAHTLCVSTQLPINMRGGNGKIAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSIIALFRVDFTGRGELAERQQKLAQMLSRLIKIAEEFNVAVYMTNQVVADPGGGVFVSDPKKPAGGHVLAHAATIRLMFRKGKGEQRVCKVFDAPNLPESEAISFLVP 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52005627 52008589 - Bma024691.1 Bma06g01573 85075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01573 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 325 IPR027417 -
Bma06g01573 331 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 12 329 - -
Bma06g01573 331 Pfam Rad51 89 326 IPR013632 -
Bma06g01573 331 TIGRFAM recomb_DMC1: meiotic recombinase Dmc1 29 326 IPR011940 GO:0000150|GO:0003677|GO:0005634|GO:0007131
Bma06g01573 331 Gene3D - 6 88 - -
Bma06g01573 331 Gene3D - 89 330 IPR027417 -
Bma06g01573 331 ProSiteProfiles RecA family profile 1. 102 270 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Bma06g01573 331 CDD Rad51_DMC1_radA 106 325 IPR033925 GO:0003677
Bma06g01573 331 ProSiteProfiles RecA family profile 2. 276 325 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Bma06g01573 331 PIRSF Rad51 15 330 IPR016467 -
Bma06g01573 331 SUPERFAMILY Rad51 N-terminal domain-like 21 88 IPR010995 GO:0000166
Bma06g01573 331 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 12 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01573 K10872 DMC1; meiotic recombination protein DMC1 - rcu:8280218 603.594
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00822 Bma06g01573 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01573 Bma-Chr6:52005627 Bma07g00578 Bma-Chr7:8146874 1.27E-101 dispersed
Bma02g00822 Bma-Chr2:44733403 Bma06g01573 Bma-Chr6:52005627 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01573 Bma_Chr06 FPKM 5.033434 0.0 8.26505 10.831616 10.213387 10.853625 8.578528 18.521248 18.964825 17.744654