Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01574 ATGCCCATGAGGCAGATGAAAGAGAGCTCGGAGCAGCACCTTGTAGTCAAAACCCATTTCCAAGACTCCATGAATCCCCCTCAGAAAGCTCCAAAAACCGCCCAAAACTGTAAAGGTCCGCCCCACAATGAAACCCAGAACGGTAAGTGCCAAAACCAAGCTTCTCCGCCGACGAAAAACAAGGGAAGAAGGCGGGGAAGAGGCGGCAAGAAATCAGACCAGAGTGACGTTTATCTCCGGCCAAGCTCCCGTCACTGTACGTTGGCGCATAAGCCGGTAACGCCAGAGCCGCCTGACGGCGGCAACTTCTGTGAAACAGCCATTGGTTTTCCTAGTTCAACCAAAGCTTTAAATTTTGCTCCTAGGCCTGGGCAAGGGCAGATTGGAACGAAGTGTATCGTAAAGGCCAACCATTTTTTTGCAGAATTACCAGAAAAAGACTTGAATCAATATGATGTTAGTATAACTCCTGAAGTTGCATCAAGAACTGTAAACAGAGCTATAATTGCGGAACTGGTTAGATTATATAAAGCTTCTGAATTGGGAATGAGATTGCCTGCTTACGATGGAAGAAAGAGTTTATACACAGCTGGGGAGCTTCCCTTTGTTTGGAAAGAGAGGGAAAGACTATATAAAGTCGTTATTAAATTCGTAGCTCGTTCCAATTTGCATCATCTAGGCCAGTTCTTAGCTGGCCGGCGAGCAGACGCCCCTCAAGAAGCTTTGCAAATACTTGACATTGTATTAAGGGAGCTATCGATCAAAAGATTGTGCCCAGTGGGAAGATCCTTTTTTTCACCAGACATTAGATCGCCTCAGCGGCTTGGTGATGGCTTAGAATCTTGGTGTGGGTTTTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTGAATATTGATATGGCAGCGGCGGCATTCATCGAACCTCTCCCGGTTCTTGAGTTTGTCGGCCAGCTTCTCAGCAAGGACGTTCTGTCAAGGCCGCTGGCTGATTCCGATCGTGTGAAGATTAAGAAGGCTTTGAGAGGAGTGAAAGTCGAAGTCACCCACAGAGGAAATGTTCGAAGAAAGTATCGTGTTTCAGGATTGACATCTCAGCCTACCCGAGAACTCATATTTCCAGTCGATGAGAACTCAACGATGAAGTCGGTCGTTGAATACTTCCAGGAGATGTATGGATTCACTATTCAACATGCACATCTCCCTTGTCTTCAAGTAGGAAATCAGAAGAAGGCCAATTATCTGCCAATGGAGGCCTGCAAAATTGTTGAAGGTCAACGGTATACGAAAAGATTAAATGAGAAGCAGATCACTGCCCTCCTAAAAGTTACCTGCCAAAGACCGAGAGATCGAGAAAATGACATTCTCCAGACTGTTCAACATAATAACTATGATCAAGATCCTTACGCCAGGGAATTTGGTATCAAAATCAGTGAGAAAATGGCTTCTGTCGAGGCTAGAATACTTCCTGCCCCTTGGCTTAAATATCACGAGACTGGCAAGGAAAAAGATTGTTTGCCTCAAGTAGGCCAATGGAATATGATAAACAAGAAAATGATTAATGGGATGACTGTCAGCCGATGGGCGTGCATTAACTTCTCGAGGAGCGTGCAAGAAAGTGTGGCTCGTGGATTTTGTAATGAATTGGCTCAAATGTGTCAAGTCTCTGGAATGGAATTTAATCCGGAACCTGTCATTCCAATATACAATGCTCGTCCCGAGCAAGTGGAGAGGTCGTTGAAGCATGTTTTTCATGCTTCTATGAACAAAACTAAAGGAAAAGAGTTAGAGCTATTACTAGCTATTTTGCCTGACAACAACGGTTCCCTCTATGGTATGCTTCTTGTGACAGAACATTTGACAAATTGGTCATCGAATGAGATTTCAATGACCCAAATCTATATTTCAGGTGATCTCAAGCGAATTTGCGAGACAGATCTTGGTTTGATATCGCAATGTTGTCTTACAAAACACGTGTTTAAGATCAGCAAACAATACTTAGCGAACGTGTCGTTGAAGATCAATGTCAAGATGGGAGGTAGAAACACTGTTCTTCTCGATGCCATCAGCTGCAGAATACCTTTAGTGAGTGACATACCAACCATAATATTTGGAGCTGATGTAACCCACCCAGAAAACGGAGAAGATTCTAGCCCTTCTATAGCTGCTGTGGTAGCCTCACAGGATTGGCCAGAAGTTACTAAATATGCCGGACTGGTTTGTGCTCAAGCCCACCGACAAGAACTCATTCAAGACTTGTACAAAACTTGGCAAGATCCCGTCCGAGGTGCAATTAGTGGTGGCATGATCAGAGACCTTCTGGTATCGTTCAGGAAGGCAACGGGGCAGGCTTGTGCATCATTAGAACCAAATTATCAACCACCCGTAACTTTCATCGTCGTGCAAAAACGACACCATACTCGTTTTTTTCCCAACAATCATAGAGACCGAAGTAGCACTGACAAGAGTGGGAATGTTTTGCCCGGCACTGTGGTTGATTCCAAGATATGTCATCCTACCGAATTTGATTTCTACCTTTGCAGCCATGCTGGTATCCAGGGGACAAGTCGGCCAGCTCATTACCATGTTCTCTGGGATGAGAACAATTTTACGGCAGATGGAATTCAGATGCTGACGAACAATCTATGTTACACTTACGCGAGGTGTACTCGCTCTGTTTCTGTCGTTCCTCCAGCATATTATGCACATCTAGCTGCTTTTCGAGCTCGATTTTACCTAGAACCGGAGATGCAAGACAACAACTCGACTAATCATTCGACCAAAATGACTCGGCCGGTAGGAGAGTCAGGAGTTCGACCATTGCCAGCTTTGAAGGAGAATGTAAAGAGAGTCATGTTTTATTGCTAA 2871 44.69 MPMRQMKESSEQHLVVKTHFQDSMNPPQKAPKTAQNCKGPPHNETQNGKCQNQASPPTKNKGRRRGRGGKKSDQSDVYLRPSSRHCTLAHKPVTPEPPDGGNFCETAIGFPSSTKALNFAPRPGQGQIGTKCIVKANHFFAELPEKDLNQYDVSITPEVASRTVNRAIIAELVRLYKASELGMRLPAYDGRKSLYTAGELPFVWKERERLYKVVIKFVARSNLHHLGQFLAGRRADAPQEALQILDIVLRELSIKRLCPVGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMAAAAFIEPLPVLEFVGQLLSKDVLSRPLADSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELIFPVDENSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNNYDQDPYAREFGIKISEKMASVEARILPAPWLKYHETGKEKDCLPQVGQWNMINKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIYNARPEQVERSLKHVFHASMNKTKGKELELLLAILPDNNGSLYGMLLVTEHLTNWSSNEISMTQIYISGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGAISGGMIRDLLVSFRKATGQACASLEPNYQPPVTFIVVQKRHHTRFFPNNHRDRSSTDKSGNVLPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQMLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYLEPEMQDNNSTNHSTKMTRPVGESGVRPLPALKENVKRVMFYC 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52016946 52022843 - Bma024692.3 Bma06g01574 85076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01574 956 Pfam N-terminal domain of argonaute 131 249 IPR032474 -
Bma06g01574 956 PANTHER PROTEIN ARGONAUTE 10 637 783 - -
Bma06g01574 956 Pfam PAZ domain 337 441 IPR003100 GO:0005515
Bma06g01574 956 MobiDBLite consensus disorder prediction 16 59 - -
Bma06g01574 956 Pfam Piwi domain 784 913 IPR003165 GO:0003676
Bma06g01574 956 Pfam Argonaute linker 1 domain 259 308 IPR014811 -
Bma06g01574 956 SMART Piwi_a_2 629 915 IPR003165 GO:0003676
Bma06g01574 956 Pfam Argonaute linker 2 domain 451 497 IPR032472 -
Bma06g01574 956 Pfam Mid domain of argonaute 508 584 IPR032473 -
Bma06g01574 956 PANTHER PROTEIN ARGONAUTE 10 784 955 - -
Bma06g01574 956 PANTHER PROTEIN ARGONAUTE 10 60 615 - -
Bma06g01574 956 ProSiteProfiles PAZ domain profile. 311 425 IPR003100 GO:0005515
Bma06g01574 956 Gene3D - 489 687 - -
Bma06g01574 956 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 784 955 - -
Bma06g01574 956 ProSiteProfiles Piwi domain profile. 599 915 IPR003165 GO:0003676
Bma06g01574 956 CDD Piwi_ago-like 469 914 IPR045246 -
Bma06g01574 956 SMART PAZ_2_a_3 311 447 IPR003100 GO:0005515
Bma06g01574 956 SUPERFAMILY Ribonuclease H-like 589 915 IPR012337 -
Bma06g01574 956 Gene3D paz domain 304 429 - -
Bma06g01574 956 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 637 783 - -
Bma06g01574 956 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 60 615 - -
Bma06g01574 956 SUPERFAMILY PAZ domain 305 466 IPR036085 GO:0005515
Bma06g01574 956 CDD PAZ_argonaute_like 310 424 - -
Bma06g01574 956 SMART DUF1785_2 258 310 IPR014811 -
Bma06g01574 956 Gene3D - 693 783 IPR036397 GO:0003676
Bma06g01574 956 Gene3D - 784 956 IPR036397 GO:0003676
Bma06g01574 956 MobiDBLite consensus disorder prediction 1 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g00821 Bma06g01574 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01574 Bma-Chr6:52016946 Bma08g00120 Bma-Chr8:1483433 0 dispersed
Bma08g00975 Bma-Chr8:48792984 Bma06g01574 Bma-Chr6:52016946 1.41E-12 transposed
Bma02g00821 Bma-Chr2:44708823 Bma06g01574 Bma-Chr6:52016946 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01574 K11593 - pvy:116141441 1667.51