Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01590 ATGGACCCTGCAGCCGATTCACCGCAGCTGAAACAAGACCATCGCCAGGTTTCGAATAGCTGCGGCGAGAGAAGTTATAGTCGAAGCAGAGTAGAGGAAGAAGAAAGAGAGACAGGAGAAGGTGTGGTCGAGGTTGGAACGAAAAGGCCCAGAGGACGACCACCTGGATCCAAAAACAAACCGAAACCACCGATCTTTCTCGATCGGGACAGCCCCAACTCGCTTCGGAGTATTGTATTGGAGGTAGCTACAGGCGCCGAAATCGCTAACAGCATCTCCGAATACGCTCGGCGGTGCCGCCGAGGCATTTGCGTCCTAAGCGCAAAGGGTTCGGTGACAAACGTTACTCTTAGACAGCCCGCCGCACCTGGCTCCGCACTGGCTCTTTACGGCAGGTTCGAGATTCTTTCTTTGTCGGGGACTTTATTACCCGACCCATCCATTATAGGGTCCAGTGCGTTGACGATCTACTTAGCCGGAGCTCAGGGGCGGGTCGTCGGCGGAAGTGTTATAGGGTCGCTAGTTGCAGCAGAACCAGTAATAATTATTGCTGCAACTTTCTCTAATGCAAATTACCAGAGGTTGCCCATTGAAGAAGATGATCCAGAGAGAGAAAATGGCGTAAGAAGCTCGCCTCCTGATGCCGGAATAGATCAACCCAGAATGCTTGATCGGTCCCCGATTCCAGTTTACAGCGATATTTACCGTCAAATCTAG 717 51.88 MDPAADSPQLKQDHRQVSNSCGERSYSRSRVEEEERETGEGVVEVGTKRPRGRPPGSKNKPKPPIFLDRDSPNSLRSIVLEVATGAEIANSISEYARRCRRGICVLSAKGSVTNVTLRQPAAPGSALALYGRFEILSLSGTLLPDPSIIGSSALTIYLAGAQGRVVGGSVIGSLVAAEPVIIIAATFSNANYQRLPIEEDDPERENGVRSSPPDAGIDQPRMLDRSPIPVYSDIYRQI 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52144263 52144979 - Bma024706.1 Bma06g01590 85092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01590 238 PIRSF ESCAROLA 2 226 IPR014476 GO:0003680
Bma06g01590 238 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 231 IPR014476 GO:0003680
Bma06g01590 238 MobiDBLite consensus disorder prediction 26 47 - -
Bma06g01590 238 CDD DUF296 76 187 IPR005175 -
Bma06g01590 238 MobiDBLite consensus disorder prediction 195 222 - -
Bma06g01590 238 MobiDBLite consensus disorder prediction 11 25 - -
Bma06g01590 238 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 189 IPR005175 -
Bma06g01590 238 Gene3D - 75 204 - -
Bma06g01590 238 PANTHER DNA-BINDING PROTEIN-LIKE 18 231 - -
Bma06g01590 238 ProSiteProfiles PPC domain profile profile. 72 214 IPR005175 -
Bma06g01590 238 MobiDBLite consensus disorder prediction 1 70 - -
Bma06g01590 238 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01590 Bma-Chr6:52144263 Bma02g01149 Bma-Chr2:53432008 1.68E-57 dispersed
Bma11g00305 Bma-Chr11:2870731 Bma06g01590 Bma-Chr6:52144263 3.65E-41 dispersed
Bma02g00799 Bma-Chr2:42840999 Bma06g01590 Bma-Chr6:52144263 3.18E-107 wgd
Bma04g00746 Bma-Chr4:8030831 Bma06g01590 Bma-Chr6:52144263 8.69E-81 wgd
Bma05g01075 Bma-Chr5:49485995 Bma06g01590 Bma-Chr6:52144263 4.71E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01590 - - cpap:110815835 259.61