Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01595 TGGCCGGTGACCCGTGAAGTCTGCCTTTTTTCTCTCCACCCATCTTCAATCGTAGCCGATATGTCAGAGATTTACGATAGGAAGAGCGAATTGAAGGCTTTAGATGAAACAAAAGCAGGAGTAAAAGGGCTGGTCGATTCTGGACTGACCAAAGTGCCGAGGATATTCTTACAAGATCAACCCACGAAGGTCCAGGGTAAGGTTGCGCCGGACCAGACCGAATTGAGCATCCCAGTAATAGACTTAAAAGGGTCGGAAGTCGCCGATCAGATCCGGGAAGCTTGCGAAACTTGGGGGTTCTTTCAGGTGGTGAATCACGGAATTCCGGATAGAGTTTTGGAGGAGATGATCGGCGGGATACGAAGATTTCACGAGCAGAAGAATGAGGTGAAGAAAGAGTGGTACTCGCGAGATACAACGAAGACGGCGATATACAACACTAATTTCGATCTGTACACAGCTCCTTGCACTAATTGGCGGGATACCTTGACCTGCACAATGGCGCCTCGTCGTCCTCATCCTCAACAATTACCCGCCGTCTGCAGTGATATTCTCATCCAGTACTCGAATAAAGTAATTGAATTAGGATTGGTTCTGCTCGAATTATTATCGGAGTCACTTGGAATCGATCGAAACTACTTGAAAGATATAGGATGTGGGGATGGACTTCTAGTTTTGGGACATTACTATCCTCCTTGTCCTGAACCAGACGTGACACTAGGAACTAGCAGCCATGCTGATAGTAGCTTCCTCACTGTGCTCTTACAAGACCAACTCGGCGGCCTCCAAATCCTCCACCAAAATCAGTGGGTCGATGTCACCCCTGTTCCCGGAGCTCTCGTAATAAACCTCGGGGACATGATGCAGGTAAGTCTTGATTGTTGTGCGCAGCTAATAACCAACGACAGATTCGTAAGCGCTAAACACAGGGTGCTCGCAAGCAAGCAAGTGAGAATTTCAATAGCCGGGTTTATAAGAACACATCTACCACCAGAGAATTCATCAAGACTTTATGGACCGATCAAAGAGCTGTTATCGGAGAAGAACCCCCCAGTCTACCAGCAAACTACAATTAAAGACTTCGTTTCAAAGTACTACGCAATAGGGCTGAACGGAGTATCTACATTAGAATATTTCAAGCTTTGA 1146 46.68 WPVTREVCLFSLHPSSIVADMSEIYDRKSELKALDETKAGVKGLVDSGLTKVPRIFLQDQPTKVQGKVAPDQTELSIPVIDLKGSEVADQIREACETWGFFQVVNHGIPDRVLEEMIGGIRRFHEQKNEVKKEWYSRDTTKTAIYNTNFDLYTAPCTNWRDTLTCTMAPRRPHPQQLPAVCSDILIQYSNKVIELGLVLLELLSESLGIDRNYLKDIGCGDGLLVLGHYYPPCPEPDVTLGTSSHADSSFLTVLLQDQLGGLQILHQNQWVDVTPVPGALVINLGDMMQVSLDCCAQLITNDRFVSAKHRVLASKQVRISIAGFIRTHLPPENSSRLYGPIKELLSEKNPPVYQQTTIKDFVSKYYAIGLNGVSTLEYFKL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52157962 52159504 + Bma024711.1 Bma06g01595 85097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01595 381 Gene3D - 31 363 IPR027443 -
Bma06g01595 381 Pfam 2OG-Fe(II) oxygenase superfamily 228 327 IPR044861 -
Bma06g01595 381 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 21 380 - -
Bma06g01595 381 SUPERFAMILY Clavaminate synthase-like 38 369 - -
Bma06g01595 381 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 327 IPR005123 -
Bma06g01595 381 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 21 380 - -
Bma06g01595 381 Pfam non-haem dioxygenase in morphine synthesis N-terminal 77 174 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01595 - - - pop:7485152 464.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01595 Bma-Chr6:52157962 Bma15g00029 Bma-Chr15:317012 9.99E-96 dispersed
Bma09g00602 Bma-Chr9:43195764 Bma06g01595 Bma-Chr6:52157962 5.58E-83 transposed
Bma05g01073 Bma-Chr5:49470710 Bma06g01595 Bma-Chr6:52157962 9.38E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g652 . . . . . . . . . . . Cma14g01801 . Car14g01618 . . . . . . . . . . . . . . . . . . . Cone7ag0313 . Lsi05g01707 . . . . . Bda11g00624 . . . . Bma06g01595 . . Cmo14g01839 . . . . . Cpe17g00187 Bhi12g01637 . . Lac12g2192 Hepe03g0269 . Lcy13g0358 . . . . . . . . Csa03g01230 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01595 Bma_Chr06 FPKM 9.930736 8.611776 3.666356 3.407753 0.0 0.0 0.0 0.0 0.0 0.0