Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01599 ATGAAAACGGAGAGTACTTATTCTGCCCTGTTAGATTGTATCAATGCCATTGGGGCAAACAGAGTAGTATTTAACCGCCTTTACGATCCTGTTTCGGTTGCTCGAGACCACAACATTAAACAAAAACTAGCAGAACTCGGTATCTATGTGGAAACCTACAATGCAGATCTACTGTATGAACCATGGGAAGTTTATGATGAAAGAGGCCATGCCTTTACGACCTTCGATGCATGTTGGGAAAGATGCTTGTCGATGCAGAAGGAACCTGACAAACAAATTCTGATATTTGTTTTGGTCGTGATTGCAGGGGAGTTGAAAGAAATTTTGGTTGAGGAACTAGGCCTCGAAGATGAGTCGAAAAAATCTAGTAATGACTTACTGAGCAGAGCCTGGTCTCCAGGTTGGAGCAATGCCGATAAAGCTCTCACGGAATTTGTGGAACATCATTTGCACGAGTATTCGAAGAATATGCTGGAAGTTGGAGCGAGCTCCACCTCACTTTTATCTCCCTATCTTCACTTTGGAGAAGTGTCCGTCAGAAAAATTTATCAGATGGTGAGAATGAAGCATATATTATGTATAAGAGAAGGAAACTCAGAAGCTGAAGAGAGTGTGGCTCTTTATCTCAGTGCAATTGGGCTTAGAGAATATTCAAGATACTTATGCTTCAACTTCCCTTTCACACATGAGAGATCACTATTGAGTAACTTAAAATTTTTTCCTTGGGATGCCAATCAAACGCATTTTAAGACTTGGAGACATGGTCGGACGGGATACCCGTTAGTCGATGCCGGGATGAGAGAGCTATGGGCCACTGGTTGGATACACAACAAAATAAGAGTCATTGTCTCTAGTTTTGCAGTGAAAGTCTTGCTTCTTCCATGGAAATGTGGTATGAAGTATTTTTGGGACACCCTTTTGGATGCTGATTTGGAAAGTGATATTCTCGGTTGGCAGTATATTTCGGGTAGCTTACCAGATGGCCACGAGCTCGATCGACTGGACAGTCCACAGATTCAAGGCTCCAAACTTGATCCCGAGGGAGAATCCGTGAGGCACTGGCTACCCGAACTAGCTCGATTACCCACTGAGTGGATTCATCATCCTTGGGAGGCACCTCCTTCCTTGCTTAAAGCTTCTGGGGTGGAGGTGGGTATAAACTATCCAAATCCCATAATTGATGTTGATTTGGCTAGACAGAATTTGACAGAAGCTAAATTCAAAATGTGGGCAAAAGCTGCAAGCTCAAATGCTATGACGGAAACCGTTGTGGATAATTCGGACGGCTTTGAAAATCGAGCTATTCCAAAGGTTGTCTTGAAGGAAATATGTGTCCTTCGAATTCATCTAACGATCAAAGGGTGCCGAGCTTTCGGAACATTGGCAAAAGTAGCGTTACACGGAAGCGCAAAAAAGCTTTGGATGAAGAAAAGATGA 1437 43.08 MKTESTYSALLDCINAIGANRVVFNRLYDPVSVARDHNIKQKLAELGIYVETYNADLLYEPWEVYDERGHAFTTFDACWERCLSMQKEPDKQILIFVLVVIAGELKEILVEELGLEDESKKSSNDLLSRAWSPGWSNADKALTEFVEHHLHEYSKNMLEVGASSTSLLSPYLHFGEVSVRKIYQMVRMKHILCIREGNSEAEESVALYLSAIGLREYSRYLCFNFPFTHERSLLSNLKFFPWDANQTHFKTWRHGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWKCGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPQIQGSKLDPEGESVRHWLPELARLPTEWIHHPWEAPPSLLKASGVEVGINYPNPIIDVDLARQNLTEAKFKMWAKAASSNAMTETVVDNSDGFENRAIPKVVLKEICVLRIHLTIKGCRAFGTLAKVALHGSAKKLWMKKR 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52191898 52194697 - Bma024715.1 Bma06g01599 85101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01599 478 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 6 99 IPR036155 -
Bma06g01599 478 Pfam DNA photolyase 8 89 IPR006050 -
Bma06g01599 478 PANTHER CRYPTOCHROME 1 444 IPR002081 -
Bma06g01599 478 Gene3D - 58 218 - -
Bma06g01599 478 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 119 410 IPR036134 -
Bma06g01599 478 Gene3D HUPs 5 131 IPR014729 -
Bma06g01599 478 Pfam FAD binding domain of DNA photolyase 208 404 IPR005101 -
Bma06g01599 478 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 1 58 IPR006050 -
Bma06g01599 478 ProSitePatterns DNA photolyases class 1 signature 1. 257 269 IPR018394 -
Bma06g01599 478 PRINTS DNA photolyase signature 316 330 IPR002081 -
Bma06g01599 478 PRINTS DNA photolyase signature 277 295 IPR002081 -
Bma06g01599 478 PRINTS DNA photolyase signature 257 273 IPR002081 -
Bma06g01599 478 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 2 405 IPR014134 GO:0009785|GO:0009882
Bma06g01599 478 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 226 427 - -
Bma06g01599 478 PANTHER CRYPTOCHROME 2B APOPROTEIN 1 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01599 K12119 CRY2; cryptochrome 2 - tcc:18603214 695.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00784 Bma06g01599 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01411 Bma-Chr5:53456009 Bma06g01599 Bma-Chr6:52191898 0 dispersed
Bma06g01599 Bma-Chr6:52191898 Bma15g00401 Bma-Chr15:4417357 7.69E-29 dispersed
Bma02g00784 Bma-Chr2:41664247 Bma06g01599 Bma-Chr6:52191898 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01599 Bma_Chr06 FPKM 12.619329 21.184587 11.803244 11.602819 3.7397 2.799502 3.246001 2.417286 3.782105 3.214123