Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01600 ATGGGAACTGATGGGCAGAGGGGGTCTTCTACCCACCCGGCGAATATGCTTCAAACTCTCCTCCGCAAGAGAGAAAAGCTTCAAAACGATCTCCGAAACATCGAGACACAGGTTTATGAGTTAGAGACGAGTTATCTGAATGAATTTAGCCATTTTGGAAATGTATGGAAGGGTGTGGAGGGTTCTGTTTCTTCATCCAAGACCACAACGAACTTAAAGAGGTCTAGAAAACTTCAACCCGAAGATAGGCTATTCTCCTTGTCTTCTGTAACCTCACCTGTGGCTGAAGAGCTGGGCACTGTGCATGAGGATGCAGCATCTGAATTTGGTCTGGGGCGGCACAACGCCGGTTCGGGGCCCATTAATGGAGCGGGAAAGCCGAAGAAGGGTAGAACAGCTATAAGAGAGGCTAAGAGAACTAGGCTGCCTAACGAACCAGATATCAATAGCGAAAACGATCCGAGTATGAACTCGAGGTGA 480 48.12 MGTDGQRGSSTHPANMLQTLLRKREKLQNDLRNIETQVYELETSYLNEFSHFGNVWKGVEGSVSSSKTTTNLKRSRKLQPEDRLFSLSSVTSPVAEELGTVHEDAASEFGLGRHNAGSGPINGAGKPKKGRTAIREAKRTRLPNEPDINSENDPSMNSR 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52196365 52197768 + Bma024716.1 Bma06g01600 85102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01600 159 PANTHER UNCHARACTERIZED 1 156 IPR015418 GO:0000123|GO:0016573
Bma06g01600 159 PANTHER CHROMATIN MODIFICATION MEAF6-LIKE PROTEIN 1 156 - -
Bma06g01600 159 Pfam Histone acetyltransferase subunit NuA4 17 93 IPR015418 GO:0000123|GO:0016573
Bma06g01600 159 MobiDBLite consensus disorder prediction 109 159 - -
Bma06g01600 159 MobiDBLite consensus disorder prediction 60 79 - -
Bma06g01600 159 Coils Coil 17 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01600 K11344 EAF6; chromatin modification-related protein EAF6 - jre:108991070 202.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01600 Bma-Chr6:52196365 Bma09g00594 Bma-Chr9:43106299 8.81E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g707 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00263 Bda11g00631 . . . . Bma06g01600 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009553 2 4 2 2 2 0 1 1 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 2 1 1 0 1 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01600 Bma_Chr06 FPKM 672.668396 747.495544 41.190556 36.417728 70.030022 87.462387 74.348732 0.0 0.069559 0.0