Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01604 ATGAATTCGGTTGGATCACTGCTCAAAACCATTCAAAACAACCCAACTTCTGTAAAATCCATTTCCCAGATCAAGAAACTCCATGCTAAAGTCCTCAAGACTCATCCCACATCTCCATCTAACCTCTCTGCCATTCTTGCTCTCTACTCAAACTTTAATCTCCTCAATGATTCGATTATTGTCTTCAACGCGCTTCAATTTCCATCCACTCTCGCATGGAAATCGATCATCAGATGCTACGCCTCCAATGGACTTCCCCACCTCTCTCTCGCTTCCTTTGTTCGAATGCGGGCAGCCGGGCGGCGCCCTGATCATAATGTCTTTCCTTCTGTGCTCAAATCTTGTACGTTGCTCTTGGATTTCAGGTTCGGCGAGTCGGTTCATGGCTGCGCTGTGAGGCTTGGTTTGGATTTGGATTTGTATACGGCCAATGCTTTGATGAATATGTATGCCAAAGTGATGAGTGTCGATGAGAGTAATGAAATTCATGGCTTTGCCATTAAACACGGGTTAGATGGAGATTTATTTATTGGAAGTAGTTTAATAGACATGTATGCAAAGTGCACGAGAGTTGAAGATTCGTGTAAAGTGTTTAATCTCTTACCCCAACGAGACAGTATCTCTTGGAATGCTGTCATTGCTGGGTGTGTGCAGAATGGGTTCTTCGATCAAGGCTTAAATTTTTTCCGGCAGATGTTGATTGCTAAAGTTAGACCGAACCAATTTTCCTTCTCGAGTATTATGCCAGCATGTGCTCATTTGACCACTCTTCATCTGGGGAAGCAGCTCCATGGGTGCATAATTCGAAGATTTTTCGACGATAATATCTATATATCGAGCTCGTTGGTCGATATGTATGCCAAATGTGGAAATGTTAACATAGCAAGGTTGATCTTCAATGAGATGGAGTTTCGTGATATGGTATCGTGGACGGCCATGATTATGGGCTATGCCTTGCATGGCCATGCTCGAGAAGCTATCTACCTATTCGAGAAGATGGAAACAAGGGGTGTGAAGCCAAACTATGTGGCCTTCATGGGCATCCTGACGGCTTGTAGCCACTCTGGGTTGGTAGACGAAGGTTGGAAATATTTCAACAGTATGACCCGAGATTTTGGGATCGAACCAGGGCTGGAGCATTATGCTGCCATTGCCGATCTGCTCGGAAGAGCTGGAAGATTGGATGAGGCCTACGATTTCATATCGAAGATGCATTGTAAACAAACAGGGAGTGTGTGGTCGACCTTGTTATCTGCATGTCGAGTCCATAAAAATGTAGATTTGGCTGAAAAGGTGGCTAAGAAAGTACTGGAAGTCGATCCGGATAATATCGGAGCTTATCTGCTAGAACCTGTGAAGACCAAGCACCCTCAGCTTCATTATGAGGCAAAATTGTACATGCTTCTTCAAGGAGGAACGGGCATTCCACATCTTAAATGGTTTGGAGTTGAGGGTGAATACAGTGCTATGGTGATTGACCTCCTTGGCCCAAGTTTGGAAGATTTGTTTAACTATTGTAACAGGAAATTTTCTCTAAAAACGGTGTTGATGCTAGCAGATCAGTTGATAAATAGAGTTGAGTACATGCATTCACGAGGTTTTCTCCACCGTGATATAAAGCCCGACAACTATTTAATGGGATTGGGGCGCAAGGCAAATCAGGTTTACATCATTGATTATGGACTAGCAAAGAAATATCGGGATCTTCAAACCCACAAGCATATACCGTACAGAGAAAACAAGAATCTCACTGGAACAGCTCGATATGCAAGTGTTAATACTCACCTTGGTGTTGAGCAAAGCAGGAGGGACGATCTTGAATCTCTTGGTTATGTGCTTATTCTTCCATGGCAAGGTCTGAAAGCAGGAACTAAAAAACAGAAATATGACAAGATCAGTGAAAAAAAGATGCTGACTCCAATTGAGTTTCTTTGCAAATCATATCCACCAGAGTTTACATCATACTTCCATTACTGTCGATCTTTGAGGTTTGAAGACAAACCAGATTATTCATACCTGAAAAGGCTTTTCCGTGACCTTTTTATTCGAGAAGGCTATCAGTTTGATTATGTATTTGACTGGACTATATTGAAATATCCACAAATTGGATCCAGTTCTCGATCAAGACCTAGTGGGAGACCAGCGATGAACCCGTTAACTTCTGCCGAGAGAATGGAAAAACCTTCAGCAGGACATGAGATTAGGGATGGTTATCCAGGTGCTGTTGAGGCATTTGCTAGAAGGAATGCAACTGGGCAGGGTTTGCATGGTGATCATTCGAGACACAGATCGTCCAACGACGCCCCTTCATCCAAGGATGTGCAACCTGATTCAGAGCGAGGTCGGAGTTCCTCTCGAAATGGGAGCAGTTTAAAGAGGCCTGTAATATCTAGCAGCCGGCCTAGTTCGTCAGGGGAGCCTAGTGAGAACCGATCTAGCAGACTTATGTCAAGCAGTAGCCGCCTTTCTTCAAACCAAAGGATCCAACCTGGTTATGACTCCAAAACATCTTCCTTTTCCCGTCCATCTGCAATGAGGGGTGGACACGATGAAACACTCAGGAGCTTCGAGCTGTTGTCGATAGGAGCAGGGAAGAGGAAATAA 2604 43.93 MNSVGSLLKTIQNNPTSVKSISQIKKLHAKVLKTHPTSPSNLSAILALYSNFNLLNDSIIVFNALQFPSTLAWKSIIRCYASNGLPHLSLASFVRMRAAGRRPDHNVFPSVLKSCTLLLDFRFGESVHGCAVRLGLDLDLYTANALMNMYAKVMSVDESNEIHGFAIKHGLDGDLFIGSSLIDMYAKCTRVEDSCKVFNLLPQRDSISWNAVIAGCVQNGFFDQGLNFFRQMLIAKVRPNQFSFSSIMPACAHLTTLHLGKQLHGCIIRRFFDDNIYISSSLVDMYAKCGNVNIARLIFNEMEFRDMVSWTAMIMGYALHGHAREAIYLFEKMETRGVKPNYVAFMGILTACSHSGLVDEGWKYFNSMTRDFGIEPGLEHYAAIADLLGRAGRLDEAYDFISKMHCKQTGSVWSTLLSACRVHKNVDLAEKVAKKVLEVDPDNIGAYLLEPVKTKHPQLHYEAKLYMLLQGGTGIPHLKWFGVEGEYSAMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNYLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLILPWQGLKAGTKKQKYDKISEKKMLTPIEFLCKSYPPEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRSRPSGRPAMNPLTSAERMEKPSAGHEIRDGYPGAVEAFARRNATGQGLHGDHSRHRSSNDAPSSKDVQPDSERGRSSSRNGSSLKRPVISSSRPSSSGEPSENRSSRLMSSSSRLSSNQRIQPGYDSKTSSFSRPSAMRGGHDETLRSFELLSIGAGKRK 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52217651 52224647 + Bma024719.1 Bma06g01604 85106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01604 867 MobiDBLite consensus disorder prediction 703 736 - -
Bma06g01604 867 PANTHER CASEIN KINASE I-LIKE PROTEIN 447 853 - -
Bma06g01604 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Bma06g01604 867 MobiDBLite consensus disorder prediction 752 867 - -
Bma06g01604 867 SUPERFAMILY Protein kinase-like (PK-like) 429 694 IPR011009 -
Bma06g01604 867 PANTHER CASEIN KINASE-RELATED 447 853 - -
Bma06g01604 867 MobiDBLite consensus disorder prediction 754 780 - -
Bma06g01604 867 SMART serkin_6 398 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01604 867 Pfam Protein kinase domain 458 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01604 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Bma06g01604 867 Gene3D Tetratricopeptide repeat domain 14 158 IPR011990 GO:0005515
Bma06g01604 867 Gene3D Tetratricopeptide repeat domain 257 372 IPR011990 GO:0005515
Bma06g01604 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Bma06g01604 867 Gene3D Transferase(Phosphotransferase) domain 1 409 732 - -
Bma06g01604 867 TIGRFAM PPR: pentatricopeptide repeat domain 347 376 IPR002885 -
Bma06g01604 867 TIGRFAM PPR: pentatricopeptide repeat domain 207 240 IPR002885 -
Bma06g01604 867 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Bma06g01604 867 ProSiteProfiles Protein kinase domain profile. 398 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01604 867 Pfam PPR repeat family 205 252 IPR002885 -
Bma06g01604 867 Pfam PPR repeat family 306 352 IPR002885 -
Bma06g01604 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Bma06g01604 867 MobiDBLite consensus disorder prediction 781 843 - -
Bma06g01604 867 SUPERFAMILY TPR-like 206 443 IPR011990 GO:0005515
Bma06g01604 867 Gene3D Tetratricopeptide repeat domain 159 256 IPR011990 GO:0005515
Bma06g01604 867 Pfam PPR repeat 280 303 IPR002885 -
Bma06g01604 867 Pfam PPR repeat 381 406 IPR002885 -
Bma06g01604 867 Pfam PPR repeat 72 100 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01604 K08960 CSNK1E; casein kinase 1, epsilon [EC:2.7.11.1] - jre:108991207 718.768
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00775 Bma06g01604 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01604 Bma-Chr6:52217651 Bma10g00408 Bma-Chr10:4267206 0 dispersed
Bma10g00203 Bma-Chr10:1809372 Bma06g01604 Bma-Chr6:52217651 6.35E-39 transposed
Bma02g00775 Bma-Chr2:41299708 Bma06g01604 Bma-Chr6:52217651 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g724 . . . . . Bpe14g01261 . . Cmo08g01053 . Cma06g01316 Cma14g01817 Car06g01133 Car14g01629 . Cpe08g00338 Cpe03g01520 Bhi01g00721 . . . . . . Cla06g00672 Cam06g0721 Cec06g0729 Cco06g0737 Clacu06g0712 Cmu06g0698 Cre06g1469 Cone14ag0152 Cone15ag0166 Cone7ag0330 Cone4ag0335 Lsi05g01738 Csa02g01054 Chy05g00315 Cme06g00483 Blo02g00750 Blo07g00269 Bda11g00636 Bda13g00058 . Bpe13g00553 Bma02g00775 Bma06g01604 . Cmo06g01326 Cmo14g01855 Cma08g01078 . Car08g00952 . . Cpe17g00199 Bhi12g01609 Tan06g2404 . . Hepe03g0291 . Lcy13g0383 Cla05g00439 . Cec05g0487 . Clacu05g0474 . . Lsi09g01228 Csa03g01201 Chy06g00465 Cme05g00576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012564 0 2 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 0 0 1 1 0 0 1 0 0 0 1 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66567 PF00069 Pkinase 1.60E-13 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01604 Bma_Chr06 FPKM 5.562422 6.53129 6.226921 5.7753 16.403561 16.022856 16.322363 20.889336 19.48451 17.684443