Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01611 ATGGAAGACGGGAAAACCAGCGTCACTCGTCGCCTGCAGGCTGCGAAGCTCAAATCTGGAAAATCTTACAGTCAGATTGCACAAGAGACTGGCCTCACTAACGTTTACGTGGCTCAGCTATTGCGCCGACAAGCTCACCTCAAGTCTGAGACCGCCCCCAAACTCCGCGCTGCTTTGCCCGCTCTCACTGATGATCTCGTCCAGGAGATGCTGAGGCCTCCAATGAGGTCGTACGATCCCCAATTGATCCAAGAACCTACGATTTACAGGTTGAATGAAGCAGTCAATCATTTTGGAGAGAGCATCAAGGAAATAATCAACGAGGAGTTTGGTGATGGCATTATGTCAGCCATAGACTTCTTCTGCTCCGTTGACAAAGTGAAAGGCGTCGATGGAAAGGAACGGGTAGTGGTGACATTCGACGGGAAGTACTTGCCTCACACAGAGCATGTTAGTTTCTTAATTGTTTCTTTTTTTTTTGAAGAATGTCGATATTCCAAGTGTTATTCTTAG 513 47.37 MEDGKTSVTRRLQAAKLKSGKSYSQIAQETGLTNVYVAQLLRRQAHLKSETAPKLRAALPALTDDLVQEMLRPPMRSYDPQLIQEPTIYRLNEAVNHFGESIKEIINEEFGDGIMSAIDFFCSVDKVKGVDGKERVVVTFDGKYLPHTEHVSFLIVSFFFEECRYSKCYS 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52272317 52273433 - Bma024726.1 Bma06g01611 85113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01611 170 SUPERFAMILY Cyanase C-terminal domain 84 149 IPR036581 GO:0009439
Bma06g01611 170 SUPERFAMILY lambda repressor-like DNA-binding domains 5 80 IPR010982 GO:0003677
Bma06g01611 170 Pfam Cyanate lyase C-terminal domain 82 148 IPR003712 GO:0009439
Bma06g01611 170 Gene3D - 2 81 IPR010982 GO:0003677
Bma06g01611 170 PANTHER CYANATE HYDRATASE 4 151 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 TIGRFAM cynS: cyanase 8 148 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 Hamap Cyanate hydratase [cynS]. 1 163 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 SMART Cyanate_lyase_2 77 150 IPR003712 GO:0009439
Bma06g01611 170 PIRSF Cyanate_hydratas 1 150 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 Gene3D - 84 150 IPR036581 GO:0009439
Bma06g01611 170 PRINTS Cyanase signature 135 145 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 PRINTS Cyanase signature 16 31 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 PRINTS Cyanase signature 36 53 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 PRINTS Cyanase signature 85 99 IPR008076 GO:0008824|GO:0009439
Bma06g01611 170 PRINTS Cyanase signature 103 119 IPR008076 GO:0008824|GO:0009439
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01611 K01725 cynS; cyanate lyase [EC:4.2.1.104] - jre:108991204 251.521
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g753 . . . . . . . . . . . Cma14g01831 . Car14g01642 Sed12g0452 . Cpe03g01534 Bhi01g00696 Tan10g0654 Cmetu06g1756 . Hepe05g1678 . . . . . . . . . . . . Cone4ag0351 Lsi05g01753 . . . . Blo07g00277 . . . . . Bma06g01611 . . Cmo14g01872 . . . . . . . . . . . . . . . . . . . . . Csa03g01186 Chy06g00450 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013973 0 1 1 1 0 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01611 Bma_Chr06 FPKM 2.079012 2.094022 2.257946 1.713245 1.693382 2.51393 2.497732 3.208552 5.115145 7.036734