Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01616 CAAGTCTCCGGTGAGGTGCCGGAAGAGCCGGTTGTTTCTACCAAATCCGGTTTGCTCTACGAGAAGCGTTTAATCGAGCGGCATATATTGGACTATGGAAAATGCCCAATCACCGGAGAATCACTTACCATGGATGATGTTGTTCCAATTAAAACTGGCAAGATAGTAAAGCCCAGACCTGTTCAAGCTGCTAGCATTCCAGGCATGTTAGGAATGTTCCAGAATGAATGGGATGGATTGATGCTATCTAATTTTGCACTTGAACAACAACTGCATACGGCTAGACAAGAGCTTAGCCATGCCTTGTACCAGCATGATGCTGCATGTCGTGTGATCGCGAGGCTTAAAAAAGAAAGGGATGAATCTAGGTCATTACTTGCTCAAGCTGAGAGGCAAATGCCCGTTGTAGGATCAGCACCAGTTGTAAATGCTTCTGTTCATAGCAACGGGAAAAGAGGCGCTGAAGATGAAGAGTTAGGCCCTGATGGAAAAAGAATGCGCTCGGGAATAACTACTACTATCATCTCTGAGCTTACAGAGTGTAATGCTGCACTTTCACAGCAGCGGAAAAAGCGACAGATACCAGCAACTTTGGCTCCTGTTGATCGTTTGGAGGGGTATACCCAGATATCTAGTCATCCTCTCCATAAAACGAACAAACCGGGCATTTTATCTCTCGACATTCATTACAGCAAGGACTTAGTTGCTACTGGTGGGCTTGATTCCAATGCTGTAATTTTTGATCGACCTTCAGGACAGATTTTATCAACACTTACTGGTCATTCTAAGAAGGTGACTAGTGTAAAGTTTGTGGGACAAGAGGCATTATTCTTGACTGGTTCGGCTGATAAGACTGTTCGCATTTGGCAAAGCTCTGATGATGGGAACTATAATTGTAGGCATATCTTAAAAGATCATACGGCTGAGGTCCAAGCAGTTACTGTTCATGCTACAAACAACTACTTTGTGACCGCATCTCTTGATAACACATGGTGTTTTTATGAAATTGCTTCTGGATTATGTCTAGCACAGGTCGCTGACACTTCAGGAACGGAGGGCTACACATCTGCAGCCTTTCACCCTGACGGTCTTATCCTTGGAACAGGTACATCTGAGGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGACAAATGTTGCCAGATTTGATGGACATGTTGGAGCTGTAACTGCAATTTCTTTTTCAGAAAATGGTTACTTCCTTGCGACTGCTGCTCATGATGGTGTAAAGCTATGGGATCTACGCAAATTGAAGAACTTCAGGACATTTTCTCCATATGATTCAGATACACCATCAAACTCTGTTGAATTTGACCAAAGTGGAAGTTATCTTGCAATTGGAGGATCAGATACAAGGGTTTACCAAGTTGCAAGCGTTAAATCTGAATGGAATTGTATCAAGACCATTCCAGATTTGTCTGGAACAAGTAAAGCAACGTGCATCAAATTTGGTCCAGATGCAACATACTTAGCAGTAGGATCAATGGATCGAAACCTCCGGATATTTGGTTTGCCCGGGGAAGATGGTCCAACTGAGTCATAA 1563 43.19 QVSGEVPEEPVVSTKSGLLYEKRLIERHILDYGKCPITGESLTMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRSLLAQAERQMPVVGSAPVVNASVHSNGKRGAEDEELGPDGKRMRSGITTTIISELTECNAALSQQRKKRQIPATLAPVDRLEGYTQISSHPLHKTNKPGILSLDIHYSKDLVATGGLDSNAVIFDRPSGQILSTLTGHSKKVTSVKFVGQEALFLTGSADKTVRIWQSSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYEIASGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSDTPSNSVEFDQSGSYLAIGGSDTRVYQVASVKSEWNCIKTIPDLSGTSKATCIKFGPDATYLAVGSMDRNLRIFGLPGEDGPTES 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52288754 52295081 + Bma024730.1 Bma06g01616 85118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01616 520 SUPERFAMILY WD40 repeat-like 218 509 IPR036322 GO:0005515
Bma06g01616 520 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 388 IPR001680 GO:0005515
Bma06g01616 520 CDD WD40 222 509 - -
Bma06g01616 520 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 422 - -
Bma06g01616 520 MobiDBLite consensus disorder prediction 145 167 - -
Bma06g01616 520 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 429 IPR001680 GO:0005515
Bma06g01616 520 CDD RING-Ubox_PRP19 2 51 - -
Bma06g01616 520 SMART Ubox_2 3 63 IPR003613 GO:0004842|GO:0016567
Bma06g01616 520 Pfam WD domain, G-beta repeat 385 420 IPR001680 GO:0005515
Bma06g01616 520 Pfam WD domain, G-beta repeat 252 289 IPR001680 GO:0005515
Bma06g01616 520 Pfam WD domain, G-beta repeat 471 509 IPR001680 GO:0005515
Bma06g01616 520 Coils Coil 112 132 - -
Bma06g01616 520 Gene3D - 199 511 IPR015943 GO:0005515
Bma06g01616 520 ProSiteProfiles U-box domain profile. 1 67 IPR003613 GO:0004842|GO:0016567
Bma06g01616 520 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Bma06g01616 520 SMART WD40_4 469 510 IPR001680 GO:0005515
Bma06g01616 520 SMART WD40_4 251 290 IPR001680 GO:0005515
Bma06g01616 520 SMART WD40_4 296 335 IPR001680 GO:0005515
Bma06g01616 520 SMART WD40_4 423 462 IPR001680 GO:0005515
Bma06g01616 520 SMART WD40_4 338 379 IPR001680 GO:0005515
Bma06g01616 520 SMART WD40_4 382 420 IPR001680 GO:0005515
Bma06g01616 520 SMART WD40_4 206 248 IPR001680 GO:0005515
Bma06g01616 520 SUPERFAMILY RING/U-box 2 50 - -
Bma06g01616 520 MobiDBLite consensus disorder prediction 150 164 - -
Bma06g01616 520 Pfam Prp19/Pso4-like 63 128 IPR013915 -
Bma06g01616 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
Bma06g01616 520 PANTHER PRE-MRNA-PROCESSING FACTOR 19 2 520 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Bma06g01616 520 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 290 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g00753 Bma06g01616 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00486 Bma-Chr4:4250811 Bma06g01616 Bma-Chr6:52288754 2.58E-10 dispersed
Bma06g01616 Bma-Chr6:52288754 Bma15g00603 Bma-Chr15:7614787 6.49E-10 dispersed
Bma08g01167 Bma-Chr8:50646429 Bma06g01616 Bma-Chr6:52288754 4.43E-10 transposed
Bma02g00753 Bma-Chr2:38717092 Bma06g01616 Bma-Chr6:52288754 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01616 K10599 - vvi:100249408 904.82