Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01617 ATGTTGGTACGGCGAAGAGCTGCGTTGAGATGCGGATCATCTACTATACGGCGGGTGTCCACTGAATCACAGCGTCGTTTTAAGGATGAGGGTGACTGGTTCTACTCATCGGAGTGGTGGGGGGACGAGTCTGAGGGAAATACCGTTTTCCGTTCTACCTCCGGAAAAGGGAACGGCGTCGTCTCTGTCGTCGCTCATCCTTCTTCCGTACCTGTCAGGGTTCACTGGGGAAAGACTGAGAGATGGCTTCAGCAAAGATATGCAGAGATATGCCCAGGTGAAGAGGAAAAGAATCGGTTCAGAATTCTTGGTTATCAATGGCGTGTTCTTCGCTTTAACGATATTACACGCCAAAGCACTGTCAAAGTCTTGGCTGCTTACCGACAATCAGAACCTGCCTCTATTCATCTCATGCAGCAGTCGCATTGCCTGGCCGTTCCTTATCTAAAGAGCATGGTTTCAGTTGGGTTTGCCACCATAGCGGCGTGTGATTACAACATTATGAATGTCGCTCACGGAAGGGAGAAAATGCATATTTTGTGCATCGGTCACGGTGGGGGGAGCTTACCTTTATATCTAGCAAGTAAAATCCAAGGTGCTGTTGTTGACATAGTTGAAATCGACCCACTTGTAATCTCTGCTTCAATCCGGGCTATGGGGTTTCCGGCTTTCTCATTGACAACCCCATCAGGCGAGCGACTTCTCTCGAAACCAAGTCTCGTTGACAACATAATGTGGAAAGGCATCCATGAACGACTTTTTCTTTACGAATCAGATGCTGAAGACTTCATCCTCAACTCATCTACTATCTACGACATGGTCTTCATCGATGCTTATGATGGTGACGACATTTTCCCTCGCAAGTTATGGGACCCACAGTGTCCATTTCTGGAAGCCTTGAGGAACCGGCTACACCCAAAGCACGGGACTGTTGTAGTTAACCTTCACTCGGATTCCGACCTTTTGGAACCGGATGGTTCTGTTCAGTCCATTCTTCTACCAGTGCTGCCAATGGGTAAGTACGTTGCCGGGGTTTGTCGGGCGTACAAAGAAGTTTTGACTGGGAAAAAGGGATCTTCCAGTGAAGTTTCAGGTATGGGATTCACAGTTTCAGTTCCTTGGGTCTGCAATTCATCTCTAGTCATGTGCAGAGGTTTTGGTAGAAGCAGTGAGCAGTGTAATATTGATTCAATCCTTAACACCCTTATAAGCAAATCCCTTGAAATTGAACGTGTTCTGGACTTGCCATTTTCGTGTTTGCAATACATAAATAGAGGTTTCGTGCTTGTTTGA 1293 46.87 MLVRRRAALRCGSSTIRRVSTESQRRFKDEGDWFYSSEWWGDESEGNTVFRSTSGKGNGVVSVVAHPSSVPVRVHWGKTERWLQQRYAEICPGEEEKNRFRILGYQWRVLRFNDITRQSTVKVLAAYRQSEPASIHLMQQSHCLAVPYLKSMVSVGFATIAACDYNIMNVAHGREKMHILCIGHGGGSLPLYLASKIQGAVVDIVEIDPLVISASIRAMGFPAFSLTTPSGERLLSKPSLVDNIMWKGIHERLFLYESDAEDFILNSSTIYDMVFIDAYDGDDIFPRKLWDPQCPFLEALRNRLHPKHGTVVVNLHSDSDLLEPDGSVQSILLPVLPMGKYVAGVCRAYKEVLTGKKGSSSEVSGMGFTVSVPWVCNSSLVMCRGFGRSSEQCNIDSILNTLISKSLEIERVLDLPFSCLQYINRGFVLV 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52297847 52299855 - Bma024731.1 Bma06g01617 85119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01617 430 Gene3D Vaccinia Virus protein VP39 114 356 IPR029063 -
Bma06g01617 430 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 10 423 - -
Bma06g01617 430 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 322 IPR029063 -
Bma06g01617 430 PANTHER OSJNBA0004N05.3 PROTEIN 10 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01617 - - - pper:18793395 610.527
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g782 . . . . . . . . . . Cma06g01293 . Car06g01110 . . Cpe08g00358 . . . . . . . . . . . . . . . Cone14ag0181 Cone15ag0191 . . Lsi05g01771 . . Cme06g00450 . Blo07g00288 Bda11g00649 . . Bpe13g00537 . Bma06g01617 . Cmo06g01301 . . . . . . . . . . . . . . . . . . . . . . Csa03g01169 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010243 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01617 Bma_Chr06 FPKM 15.843662 18.535149 14.549337 14.194192 13.165851 11.576403 12.072463 18.145044 17.346651 21.151358