Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01618 ATGCTCCTGGCGACAATCGGGCATGTGTTAGGGCGATTTGATCGGGGCGAAGCGTATGTTTTGAGGATGAAAGACCTCAATCTCTCTGCTTTTACTCTTTCCTCACCATTTTCGTCTCAGCAATGCGGAAGAACGGTTTTCAGGAAAATTGTTTCGGTTATGGCACCTCAACAAATGGAACGAAAGTCTTCCGCCACTGGCTCAGTCAAGACGGCGATGACAATGACGGAGAAGATATTGGCTAGAGCTTCTGAGAAACCACACTTAAGCCCTGGGGAAAACGTTTGGGTTAATGTTGATCTTTTAATGACCCACGATGTTGGTGGTCCTGGTTCTATAGGAATTTTCAAAAAGGAATTTGGTGAAAATGCCAAGGTTTGGGATCGAGAGAAGATTGTAATTATTCCTGACCATTATATCTTTACGAGTGATGAACGGGCAAACCGCAACGTAGACATTCTTAGGGATTTTTGCAAAGAGCAGAACATCAAGTACTTTTATGACATTAAAGATCTTAGTAATTTTAAGGTAAACCCAGACTACAAAGGTGTCTGCCATATTGCTCTTGCTCAAGAAGGCCATTGCAGGCCGGGAGAGGTCTTGCTTGGTACAGACTCTCATACTTGTACTGCTGGAGCATTTGGCCAGTTTTCAACCGGCATTGGTAATACTGATGCGGGATTTGTGTTAGGAACTGGGAAATCCCTTCTCAAGGTCCCTCCAACCTTGAGATTTGTCATAGGTGGTGAAATGCCTGACTTTTTGCTAGCCAAAGATTTGATTTTGCAAATTATTGGTGAAATATCTATGTCTGGAGCTACATACAAAGCTATGGAGTTTGTTGGCACAGCAGTTGAAAGATTAAATATGGAAGAGAGGATGACATTATGCAACATGGTTGTTGAAGCTGGAGGAAAGAATGGTGTTGTCCCTTCAGATTCTACTACATACAAATATCTGGAGGATAAGACATCTGTAGCCTATGAACCAGTATACAGTGATGGAAATGCAAGGTTTCTTTCCGAGTATAGATTCGATGTTTCAAAGTTGGAACCTTTGGTGGCCAAGCCCCATTCCCCTGATAACCGGGCTTTGGCAAGGGAATGCAAAGATGTGAAAATCGACCGAGTATATATAGGATCCTGTACTGGAGGAAAAACTGAGGACTTTCTTGCTGCCGCTAAAGTTTTTCTTGCAGCTGGAAAGAAGGTGAAAGTTCCAACATTTCTCGTCCCCGCCACCCACAAGGTATGGATGGATTTGTACGGTCTTCCTGTACCTGGGGCTGGCGGGAAAACTTGTTCCCAGATATTCGAAGAAGCTGGATGTGACACTCCTGCAAGTCCTAGTTGCGGTGCTTGTTTAGGGGGCCCTAAAGACACTTATGCACGGATGAACGAAGCTTAG 1407 44.07 MLLATIGHVLGRFDRGEAYVLRMKDLNLSAFTLSSPFSSQQCGRTVFRKIVSVMAPQQMERKSSATGSVKTAMTMTEKILARASEKPHLSPGENVWVNVDLLMTHDVGGPGSIGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCKEQNIKYFYDIKDLSNFKVNPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFSTGIGNTDAGFVLGTGKSLLKVPPTLRFVIGGEMPDFLLAKDLILQIIGEISMSGATYKAMEFVGTAVERLNMEERMTLCNMVVEAGGKNGVVPSDSTTYKYLEDKTSVAYEPVYSDGNARFLSEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLAAGKKVKVPTFLVPATHKVWMDLYGLPVPGAGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEA 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 52311927 52318583 - Bma024732.1 Bma06g01618 85120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01618 468 PRINTS Aconitase family signature 210 225 IPR001030 -
Bma06g01618 468 PRINTS Aconitase family signature 196 209 IPR001030 -
Bma06g01618 468 PRINTS Aconitase family signature 272 285 IPR001030 -
Bma06g01618 468 PRINTS Aconitase family signature 286 299 IPR001030 -
Bma06g01618 468 PRINTS Aconitase family signature 443 456 IPR001030 -
Bma06g01618 468 Pfam Aconitase family (aconitate hydratase) 93 460 IPR001030 -
Bma06g01618 468 Gene3D Aconitase, domain 3 355 468 IPR015931 -
Bma06g01618 468 PANTHER DEHYDRATASE, PUTATIVE-RELATED 19 467 - -
Bma06g01618 468 PANTHER HOMOACONITASE, MITOCHONDRIAL-RELATED 19 467 - -
Bma06g01618 468 Gene3D Aconitase, domain 3 74 352 IPR015931 -
Bma06g01618 468 SUPERFAMILY Aconitase iron-sulfur domain 69 466 IPR036008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01618 K01703 leuC, IPMI-L; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] - zju:107410237 815.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01618 Bma-Chr6:52311927 Bma12g00802 Bma-Chr12:37482825 6.27E-15 dispersed
Bma06g01618 Bma-Chr6:52311927 Bma02g01324 Bma-Chr2:55743008 3.94E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0354 Cone4ag0366 . . . . . Blo07g00289 Bda11g00650 . . Bpe13g00536 . Bma06g01618 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010244 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01618 Bma_Chr06 FPKM 5.289201 6.031556 4.78431 5.113665 5.221383 6.097303 6.053514 5.909523 5.177587 6.001236