Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00005 ATGAACGCTTTCAGCAGTGCCTCATGCCCCAACTGCGGAGGCCCGGCTGCAATGGGTGAGATGTCGTTTGATGACCATCATTTAAGGATTGAAAATGTCCGACTACGAGAAGAGGTTGATGGAATGGCTCCTAAATACGTAGGCAGACCTTTTGCCTCGTACAACCACAGCCAATCTGACGTTGGAGTTGGTGATTTTGGTGGGAATTCAGGCTACGTGTACGGGGCAAACGAACTTGTCATGCCGATGTCCAGGCCAACGGAGGCTGATAAACCTGTGATCGTCGAGCTTGCTGTTGCAGCTATGGAAGAGCTAGTCAGCATGGCTGAAAAGGGACAGCCTTTGTGGATACCAGCTGGTGATAATGCCTCCGAGATACTGAATGAAGAAGAATATTTCAAGCTTTTCCCAAGAGAAATTTTCTCAAAACCTTTGGGCTTAAGAACCGAAGCTTCACGGCAATCCGCAGTCGTCATCATGAACCACATTAAGCTCATTGAGATTTTCATGGACGTGAATAAATGGTCAACTGTATTTTGTGGTATTGTTTCAAGAGCACTTCTCCTGGAAGTCCTATCAACTGGAGTTGCTGGAAACCGAAATGGAGCCCTACAAGTGATCACAGCTGAATTCCAGGTCCCTACGCCGCTAGTTCCGACCAGGGAAAATTACATGGTCAGGTACTGCAAGAAGATTGGAGATGGGACTTGGGCTATCGTCGACGTTTCGCTCGATACTTTACGCCCAACCTCTATGCCAAAGATCAGTCGAAGAAGACCATCTGGATGCTTGATCCAAGAACTTCCAAATGGCTGCTCCAAGGTGACGTGGGTCGAACACGTAGAAGAAGATATCAGAGCCGTTCATAATCTCTACCAATCACTTGTTAGTTCTGGGCTTGCTTTTGGAGCCACACGATGGGTGGCTACGTTAGATCGACAGTGCGAACGTCTCGCAAGCTCCATGGCCAACGACATCGCTGCTGGAGATTTACGCAGTAACCATCTTTTGTTTATTCTGTAA 1023 47.7 MNAFSSASCPNCGGPAAMGEMSFDDHHLRIENVRLREEVDGMAPKYVGRPFASYNHSQSDVGVGDFGGNSGYVYGANELVMPMSRPTEADKPVIVELAVAAMEELVSMAEKGQPLWIPAGDNASEILNEEEYFKLFPREIFSKPLGLRTEASRQSAVVIMNHIKLIEIFMDVNKWSTVFCGIVSRALLLEVLSTGVAGNRNGALQVITAEFQVPTPLVPTRENYMVRYCKKIGDGTWAIVDVSLDTLRPTSMPKISRRRPSGCLIQELPNGCSKVTWVEHVEEDIRAVHNLYQSLVSSGLAFGATRWVATLDRQCERLASSMANDIAAGDLRSNHLLFIL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1084866 1086247 + Bma024771.1 Bma07g00005 85142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00005 340 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-LIKE 3 331 - -
Bma07g00005 340 Gene3D - 125 321 IPR023393 -
Bma07g00005 340 CDD START_ArGLABRA2_like 91 316 - -
Bma07g00005 340 SMART START_1 96 317 IPR002913 GO:0008289
Bma07g00005 340 SUPERFAMILY Bet v1-like 87 319 - -
Bma07g00005 340 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 331 IPR042160 -
Bma07g00005 340 Pfam START domain 97 317 IPR002913 GO:0008289
Bma07g00005 340 ProSiteProfiles START domain profile. 87 320 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01677 Bma-Chr4:52795261 Bma07g00005 Bma-Chr7:1084866 0 dispersed
Bma07g00005 Bma-Chr7:1084866 Bma02g01326 Bma-Chr2:55771471 5.97E-153 dispersed
Bma07g00005 Bma-Chr7:1084866 Bma12g00798 Bma-Chr12:37356095 1.18E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00005 K09338 - qsu:112016283 483.796