Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00020 ATGGATGGTGGGGCTAATGGCGCCACTGGTCTGATGGCGTTTGGAGAAAACAGTAGCGGGCTGTGTTCAATGATGACGATGATGCATGGTATGAGCGCCCATCATACCCATCATCATCCTCATCTTAACTCAAACGCAGAGACCAACAGTCCATTTCTTCCGCTGCCTTCTTCGACTACCAATAATCACGACCAAAATCGTAATAATAGCAACAACAGCTCTTGGTGTTATTTCATGGACAGCCACAATAATGCTGAAAACAACTCGTCTTCTGATGTCAAGGCTAAGATTATGGCTCATCCTCGCTATCATTGTCTGTTAGCTGCTTATCTTAATTGTCAAAAGGTAGGGGCTCCTCCGGAAGTGGTGGTTAAGCTGGAGGAAGCTTGTGCTTCAGTGGCGTCAATGGGCGGATGTCTCGGTGAAGATCCAGCGTTAGATCAATTCATGGAAGCCTACTGTGAGATGCTGACCAAATACGAGCAAGAGCTCTCAAAACCCTTCAAGGAAGCCATGCTTTTTCTTCAAAGAATAGAATGCCAGTTCAAGGCTCTCACCGTTTCTTCAGACAATGTTGTTTCAATACTCTATGCAGGTTGCGAGGGAGGTGAAAGGAATGGATCATCAGAAGAAGAAGTGGATGCAAACAACCAGGGCATTGACCCTCAAGCAGAAGACAGGGAGCTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTGAAGCAGGAATTCATGAAGAAGCGGAAGAAAGGTAAGCTGCCCAAAGAGGCGAGGCAACAGCTACTGGATTGGTGGAGCAGACATCACAAATGGCCTTACCCTTCGGAGTCGCAGAAGTTGGCTCTTGCGGAGTCGGGAACACATTCAACAAAAACAATAAGTGAGGTTAGTGGAACTGGAAAAAAGCCGTGGCGGCAAAAGGGTACTGGTCGAGCCAGGCATGGCACTTTACGTGGGCCTCAGTTTAGAGGTGGGGCGACGATGCATGGACCAAAGCCACGAAGTCATGCTTTCAAGGTTAACAAGAAAGTCCGACGATTGGGTTTGAAAATTGCTTTGACGGCTCGTGCAGCAGAGGGAAAGGCAAGGGCTCATTTGAGCGGGATTGACATTTTCTTCATAAATTTGCAGCTTCTTGTGTTTGAGGATATGGAGGTTCCTACCCATAAAACAAAGCAAATCGTGAATTACTTCGATCAAACAGAGAATGTTAAGAAACTTCTTCTGGTCGATGGCGGCCTCATAAATGAGAATCTGAAGTTAGCCACCCAAAATCTACATTACGTGAATGTTTTGCCTTCAATTGGTTTGAATGTGTACAGCATTCTTCAACATGACACACTGGTGATGTCTCGCAATGCAGTGGACAGAATTGTCACGCGGATGCACACTCCAATAAACCATTAA 1419 46.37 MDGGANGATGLMAFGENSSGLCSMMTMMHGMSAHHTHHHPHLNSNAETNSPFLPLPSSTTNNHDQNRNNSNNSSWCYFMDSHNNAENNSSSDVKAKIMAHPRYHCLLAAYLNCQKVGAPPEVVVKLEEACASVASMGGCLGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRIECQFKALTVSSDNVVSILYAGCEGGERNGSSEEEVDANNQGIDPQAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHHKWPYPSESQKLALAESGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALTARAAEGKARAHLSGIDIFFINLQLLVFEDMEVPTHKTKQIVNYFDQTENVKKLLLVDGGLINENLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMSRNAVDRIVTRMHTPINH 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1185128 1191044 - Bma024786.2 Bma07g00020 85157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00020 472 PANTHER - 3 299 - -
Bma07g00020 472 Gene3D - 281 471 IPR023574 GO:0003735|GO:0005840|GO:0006412
Bma07g00020 472 SMART KNOX2_2 136 187 IPR005541 GO:0003677|GO:0005634
Bma07g00020 472 SUPERFAMILY Ribosomal protein L4 285 465 IPR023574 GO:0003735|GO:0005840|GO:0006412
Bma07g00020 472 MobiDBLite consensus disorder prediction 289 339 - -
Bma07g00020 472 MobiDBLite consensus disorder prediction 43 67 - -
Bma07g00020 472 Pfam KNOX1 domain 93 131 IPR005540 GO:0003677|GO:0005634
Bma07g00020 472 TIGRFAM rplD_bact: 50S ribosomal protein uL4 283 462 IPR013005 -
Bma07g00020 472 MobiDBLite consensus disorder prediction 204 228 - -
Bma07g00020 472 SMART KNOX1_2 91 135 IPR005540 GO:0003677|GO:0005634
Bma07g00020 472 SMART ELK_2 228 249 IPR005539 GO:0003677
Bma07g00020 472 Pfam Ribosomal protein L4/L1 family 286 463 IPR002136 GO:0003735|GO:0005840|GO:0006412
Bma07g00020 472 Pfam ELK domain 228 249 IPR005539 GO:0003677
Bma07g00020 472 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 299 - -
Bma07g00020 472 SUPERFAMILY Homeodomain-like 250 297 IPR009057 -
Bma07g00020 472 MobiDBLite consensus disorder prediction 34 67 - -
Bma07g00020 472 Pfam KNOX2 domain 140 186 IPR005541 GO:0003677|GO:0005634
Bma07g00020 472 MobiDBLite consensus disorder prediction 289 303 - -
Bma07g00020 472 ProSiteProfiles ELK domain profile. 228 248 IPR005539 GO:0003677
Bma07g00020 472 Hamap 50S ribosomal protein L4 [rplD]. 249 467 IPR013005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00020 Bma-Chr7:1185128 Bma08g00095 Bma-Chr8:1177722 1.17E-57 dispersed
Bma11g00089 Bma-Chr11:985500 Bma07g00020 Bma-Chr7:1185128 4.20E-20 transposed
Bma11g00018 Bma-Chr11:439380 Bma07g00020 Bma-Chr7:1185128 2.08E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00020 - - rcu:8277968 395.971