Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g00020 | ATGGATGGTGGGGCTAATGGCGCCACTGGTCTGATGGCGTTTGGAGAAAACAGTAGCGGGCTGTGTTCAATGATGACGATGATGCATGGTATGAGCGCCCATCATACCCATCATCATCCTCATCTTAACTCAAACGCAGAGACCAACAGTCCATTTCTTCCGCTGCCTTCTTCGACTACCAATAATCACGACCAAAATCGTAATAATAGCAACAACAGCTCTTGGTGTTATTTCATGGACAGCCACAATAATGCTGAAAACAACTCGTCTTCTGATGTCAAGGCTAAGATTATGGCTCATCCTCGCTATCATTGTCTGTTAGCTGCTTATCTTAATTGTCAAAAGGTAGGGGCTCCTCCGGAAGTGGTGGTTAAGCTGGAGGAAGCTTGTGCTTCAGTGGCGTCAATGGGCGGATGTCTCGGTGAAGATCCAGCGTTAGATCAATTCATGGAAGCCTACTGTGAGATGCTGACCAAATACGAGCAAGAGCTCTCAAAACCCTTCAAGGAAGCCATGCTTTTTCTTCAAAGAATAGAATGCCAGTTCAAGGCTCTCACCGTTTCTTCAGACAATGTTGTTTCAATACTCTATGCAGGTTGCGAGGGAGGTGAAAGGAATGGATCATCAGAAGAAGAAGTGGATGCAAACAACCAGGGCATTGACCCTCAAGCAGAAGACAGGGAGCTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTGAAGCAGGAATTCATGAAGAAGCGGAAGAAAGGTAAGCTGCCCAAAGAGGCGAGGCAACAGCTACTGGATTGGTGGAGCAGACATCACAAATGGCCTTACCCTTCGGAGTCGCAGAAGTTGGCTCTTGCGGAGTCGGGAACACATTCAACAAAAACAATAAGTGAGGTTAGTGGAACTGGAAAAAAGCCGTGGCGGCAAAAGGGTACTGGTCGAGCCAGGCATGGCACTTTACGTGGGCCTCAGTTTAGAGGTGGGGCGACGATGCATGGACCAAAGCCACGAAGTCATGCTTTCAAGGTTAACAAGAAAGTCCGACGATTGGGTTTGAAAATTGCTTTGACGGCTCGTGCAGCAGAGGGAAAGGCAAGGGCTCATTTGAGCGGGATTGACATTTTCTTCATAAATTTGCAGCTTCTTGTGTTTGAGGATATGGAGGTTCCTACCCATAAAACAAAGCAAATCGTGAATTACTTCGATCAAACAGAGAATGTTAAGAAACTTCTTCTGGTCGATGGCGGCCTCATAAATGAGAATCTGAAGTTAGCCACCCAAAATCTACATTACGTGAATGTTTTGCCTTCAATTGGTTTGAATGTGTACAGCATTCTTCAACATGACACACTGGTGATGTCTCGCAATGCAGTGGACAGAATTGTCACGCGGATGCACACTCCAATAAACCATTAA | 1419 | 46.37 | MDGGANGATGLMAFGENSSGLCSMMTMMHGMSAHHTHHHPHLNSNAETNSPFLPLPSSTTNNHDQNRNNSNNSSWCYFMDSHNNAENNSSSDVKAKIMAHPRYHCLLAAYLNCQKVGAPPEVVVKLEEACASVASMGGCLGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRIECQFKALTVSSDNVVSILYAGCEGGERNGSSEEEVDANNQGIDPQAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHHKWPYPSESQKLALAESGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALTARAAEGKARAHLSGIDIFFINLQLLVFEDMEVPTHKTKQIVNYFDQTENVKKLLLVDGGLINENLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMSRNAVDRIVTRMHTPINH | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1185128 | 1191044 | - | Bma024786.2 | Bma07g00020 | 85157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g00020 | 472 | PANTHER | - | 3 | 299 | - | - | |
Bma07g00020 | 472 | Gene3D | - | 281 | 471 | IPR023574 | GO:0003735|GO:0005840|GO:0006412 | |
Bma07g00020 | 472 | SMART | KNOX2_2 | 136 | 187 | IPR005541 | GO:0003677|GO:0005634 | |
Bma07g00020 | 472 | SUPERFAMILY | Ribosomal protein L4 | 285 | 465 | IPR023574 | GO:0003735|GO:0005840|GO:0006412 | |
Bma07g00020 | 472 | MobiDBLite | consensus disorder prediction | 289 | 339 | - | - | |
Bma07g00020 | 472 | MobiDBLite | consensus disorder prediction | 43 | 67 | - | - | |
Bma07g00020 | 472 | Pfam | KNOX1 domain | 93 | 131 | IPR005540 | GO:0003677|GO:0005634 | |
Bma07g00020 | 472 | TIGRFAM | rplD_bact: 50S ribosomal protein uL4 | 283 | 462 | IPR013005 | - | |
Bma07g00020 | 472 | MobiDBLite | consensus disorder prediction | 204 | 228 | - | - | |
Bma07g00020 | 472 | SMART | KNOX1_2 | 91 | 135 | IPR005540 | GO:0003677|GO:0005634 | |
Bma07g00020 | 472 | SMART | ELK_2 | 228 | 249 | IPR005539 | GO:0003677 | |
Bma07g00020 | 472 | Pfam | Ribosomal protein L4/L1 family | 286 | 463 | IPR002136 | GO:0003735|GO:0005840|GO:0006412 | |
Bma07g00020 | 472 | Pfam | ELK domain | 228 | 249 | IPR005539 | GO:0003677 | |
Bma07g00020 | 472 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 3 | 299 | - | - | |
Bma07g00020 | 472 | SUPERFAMILY | Homeodomain-like | 250 | 297 | IPR009057 | - | |
Bma07g00020 | 472 | MobiDBLite | consensus disorder prediction | 34 | 67 | - | - | |
Bma07g00020 | 472 | Pfam | KNOX2 domain | 140 | 186 | IPR005541 | GO:0003677|GO:0005634 | |
Bma07g00020 | 472 | MobiDBLite | consensus disorder prediction | 289 | 303 | - | - | |
Bma07g00020 | 472 | ProSiteProfiles | ELK domain profile. | 228 | 248 | IPR005539 | GO:0003677 | |
Bma07g00020 | 472 | Hamap | 50S ribosomal protein L4 [rplD]. | 249 | 467 | IPR013005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00020 | Bma-Chr7:1185128 | Bma08g00095 | Bma-Chr8:1177722 | 1.17E-57 | dispersed | |
Bma11g00089 | Bma-Chr11:985500 | Bma07g00020 | Bma-Chr7:1185128 | 4.20E-20 | transposed | |
Bma11g00018 | Bma-Chr11:439380 | Bma07g00020 | Bma-Chr7:1185128 | 2.08E-138 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g00020 | - | - | rcu:8277968 | 395.971 |