Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00050 ATGTCCCGACTTCGCCACCCCAACATCGTCTGCCTCCACGAGGTCCTCGCCAACAAGTCTAAGATTTTCTTTGTCATGGAGTTTGTCAAAGGTGGCGAATTGTTCTCCAAGATCGCCAAAGGCAGGTTCACCGAAGATCTCAGCCGCAAGTATTTTCAGCAGCTGATTTCTGCCGTCGGTTTTTGCCATTCTCGAGGAGTTTTTCACCGCGATTTGAAGCCCGAGAATCTTCTTGTCGACGAGAATGGTAATTTAAAGGTTACCGATTTCGGACTCAGCGCCGTCGCAGGCCAGATTGGACCCGACGGGCTGCTGCATACTCTCTGCGGCACGCCTGCGTACGTGGCGCCGGAGGTTTTGATAAAAAAAGGCTACGACGGGGCGAAGGTGGATGTGTGGGCGTGCGGGGTCATTCTCTTCGTGCTTAATGCAGGCTACTTACCGTTCAACAATCCAAATCTAATGGCAATGTACAAGAAAATTTACAAGGGCGAGTATCGGTGCCCCAGGTGGATGTCGCCGGACCTCAAGCGGTTTTTATCTCGGCTTCTCGACACAAATCCACAGACGAGGATCACCGTCGATGAAATCTTGAAGGATCCGTGGTTCACAAAAGGCGGTTTCGAGGAGATTAAATTCCATGATGTTTGCTCCAAATTTGACGACAAAGAGGACCCCAAAAGTAAGATTCTAACCGCCTTCGATATCATATCGTTCTCGCCTGGATTGGATTTATCTGGTTTGTTCGGCGAAGCGCACAATTCTGTTGAAAACAGCGAACGATTCGTATCAGCCGAGACGCCGGAGAAAATATTTGAGAAAATAGAAGACACATGCAAAAAAGAGAACCTGAGGACGAAGAAGAAAGAGTTGGCCATGGAGGTGGAGGTAGGAAGGGGGAGACGGAAACTCCGTGATAGGAATCAAGTTGTACCGATTAACGGAGGCAAATGA 954 49.16 MSRLRHPNIVCLHEVLANKSKIFFVMEFVKGGELFSKIAKGRFTEDLSRKYFQQLISAVGFCHSRGVFHRDLKPENLLVDENGNLKVTDFGLSAVAGQIGPDGLLHTLCGTPAYVAPEVLIKKGYDGAKVDVWACGVILFVLNAGYLPFNNPNLMAMYKKIYKGEYRCPRWMSPDLKRFLSRLLDTNPQTRITVDEILKDPWFTKGGFEEIKFHDVCSKFDDKEDPKSKILTAFDIISFSPGLDLSGLFGEAHNSVENSERFVSAETPEKIFEKIEDTCKKENLRTKKKELAMEVEVGRGRRKLRDRNQVVPINGGK 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1391637 1392590 - Bma024816.1 Bma07g00050 85187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00050 317 SMART serkin_6 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00050 317 Gene3D Transferase(Phosphotransferase) domain 1 1 231 - -
Bma07g00050 317 ProSiteProfiles NAF domain profile. 226 250 IPR018451 GO:0007165
Bma07g00050 317 Pfam Protein kinase domain 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00050 317 CDD CIPK_C 232 305 - -
Bma07g00050 317 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 1 296 - -
Bma07g00050 317 SUPERFAMILY Protein kinase-like (PK-like) 1 215 IPR011009 -
Bma07g00050 317 PANTHER - 1 296 - -
Bma07g00050 317 Gene3D Kinase associated domain 1, KA1 232 313 - -
Bma07g00050 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 67 79 IPR008271 GO:0004672|GO:0006468
Bma07g00050 317 Pfam NAF domain 229 288 IPR004041 GO:0007165
Bma07g00050 317 ProSiteProfiles Protein kinase domain profile. 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00050 Bma-Chr7:1391637 Bma07g00811 Bma-Chr7:25338716 7.09E-132 dispersed
Bma07g00050 Bma-Chr7:1391637 Bma14g01563 Bma-Chr14:32256749 1.81E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66571 PF00069 Pkinase 5.70E-57 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00050 - - tcc:18591074 461.455