Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00052 ATGGACTCCGAGATGGAAGCTATCGAGAAGAATGACACTTGGTTATTGATAGATCTACATGCTGGAGCAAAGATAATTGGTGTCAAGTTGGTTTACAAGACGAAGCTAGACAAAAATGGGAAAGTAGACAAGTACAAAGCTCGTTTAGTTGCTAAGGGTATACATTCATTTCTACATGGTGAACTAATTGAGGATGTGTTTATAGACCAGCCAAGGGATTATGAGAATCAAGAAAATCTACTCAATTTGGAAGAAGTTCTTGGGAAGGGAGCCATGAAAACAGTTTACTGGGCAGTTGATGAAGTTCTTGGAATGGAGGTAGCATGGAATCAGATCAAACTGAATGTGGTTCTTCGTTCACCCGAAGATTTGGAGAGGCTGTACTCAGAGGTTCACCTCCTCAGCACCCTCAAGCACGATTCGATCATTCGATTCTACACCTCTTGGATCGATGTCGACAACAAGACCTTCAATTTTATCACCGAAATGTTTACTTCTGGTTCACTCAGACAATATAGAATGAAATATTGTCGGGTTGACATTCGAGCTATAAAGAATTGGGCTCGTCAGATCCTACAAGGGCTCGTTTATCTCCACGAGCATGATCCTCCGATAATTCACAGAGACCTGAAGTGCGATAATATCTTCGTTAATGGTCATCTTGGGCAAGTCAAGATTGGTGATCTTGGGCTTGCAGCGATTCTCCGCGGCTCTCAATCGGCTCACAGTGTTATAGGCACACCCGAGTTCATGGCTCCAGAACTATACGAGGAAGATTACAATGCGCTAGTTGATGTGTACTCATTTGGCATGTGTGTTCTTGAGATGCTTACTTCCGAGTATCCTTATAGTGAATGTACCAACCCGGCTCAAATTTACAAGAAAGTTACTTCTGGGAAGCTTCCTGCATCGTTCTACCGGGTTCAAGATCTCGAGGCACAGCGCTTCATCCAGGACGGACCCCATCATAGCTTTCACTCTTTCTCATCGTCCTCTCAAGCAACACTATGCACTTCTCCGAGGACAGATGCCGTTAGTTGGTCTCGAGAGGATTTGCTGGATGATAGCAGCTCCCAGAGCTCTTCCCTTTCTTGGAAATACTCAAACTTGAATTATATTTCTGTGGATGAGCACGAGTGGATGAATAACAAGTTCACGAGCCATAACTGTGTGCAATCTATATCAGGAAAATGTTACAAACAGAGAAAAGGTTTATTACAGCCCCAAGAAGCATCGCCTTCTAAAGATGCGAGGGCAATGAACAATCGTAAATTGACAAGGAACAGTTCGTTTGTCGATGTGCACAGCCAATTACTACACCGGTCCTTAGTCGAGGAAGTGAATCGAAGACGGTTGTTCAAGACAGTTGGAGCAGTGGAAAACATCGGATATCAAGCCCCGTGCGAAGCTTCTCCGAGCCCGAGGGCCGGAAGCGCTCGTGGGGATGCTGATTTTGTAAGAAATGCAAGAACTAGCAAAGCTCGAGGACATCAATGGCGTAAGTAA 1506 44.49 MDSEMEAIEKNDTWLLIDLHAGAKIIGVKLVYKTKLDKNGKVDKYKARLVAKGIHSFLHGELIEDVFIDQPRDYENQENLLNLEEVLGKGAMKTVYWAVDEVLGMEVAWNQIKLNVVLRSPEDLERLYSEVHLLSTLKHDSIIRFYTSWIDVDNKTFNFITEMFTSGSLRQYRMKYCRVDIRAIKNWARQILQGLVYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQSAHSVIGTPEFMAPELYEEDYNALVDVYSFGMCVLEMLTSEYPYSECTNPAQIYKKVTSGKLPASFYRVQDLEAQRFIQDGPHHSFHSFSSSSQATLCTSPRTDAVSWSREDLLDDSSSQSSSLSWKYSNLNYISVDEHEWMNNKFTSHNCVQSISGKCYKQRKGLLQPQEASPSKDARAMNNRKLTRNSSFVDVHSQLLHRSLVEEVNRRRLFKTVGAVENIGYQAPCEASPSPRAGSARGDADFVRNARTSKARGHQWRK 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1400652 1409498 - Bma024818.1 Bma07g00052 85189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00052 501 Coils Coil 499 501 - -
Bma07g00052 501 MobiDBLite consensus disorder prediction 466 501 - -
Bma07g00052 501 Gene3D Phosphorylase Kinase; domain 1 70 162 - -
Bma07g00052 501 Pfam Protein kinase domain 83 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00052 501 SUPERFAMILY Protein kinase-like (PK-like) 83 318 IPR011009 -
Bma07g00052 501 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 320 474 - -
Bma07g00052 501 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 83 318 - -
Bma07g00052 501 ProSiteProfiles Protein kinase domain profile. 81 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00052 501 Gene3D Transferase(Phosphotransferase) domain 1 164 326 - -
Bma07g00052 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Bma07g00052 501 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 320 474 - -
Bma07g00052 501 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 83 318 - -
Bma07g00052 501 CDD STKc_WNK 81 318 - -
Bma07g00052 501 SMART serkin_6 81 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00052 Bma-Chr7:1400652 Bma15g00813 Bma-Chr15:19480611 8.96E-108 dispersed
Bma07g00052 Bma-Chr7:1400652 Bma09g00404 Bma-Chr9:34113175 1.13E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66572 PF00069 Pkinase 6.70E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00052 K08867 - tcc:18591081 442.195