Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00088 ATGGGTGAGGAGCTGAAGATTAGCGCGTACGAACCCGATGCTGATGGTAGTGATGGGGAGGAGGAGCGTGTGCTAGAATGGGAGGTGGGTTTGCCCAATTCCGAAAATCTGACTCCTCTATCTCAGGTCTTGATATCGCCGGAGCTTGCCTCCGCCTTTAGAATCTCTCCGGAGCCTCGCCGGACCGTACAGGACGTCAATCGGGCATCTCGGACTACGTTATCTAATCTCCGTGGCGGACAATCACAAGCCCTGTCTTCTAATAATTTCAAGTCGTTCGACGATGATCGCACTGACGATATTGACCCCATGGTCGTAGAGTGGGAGGATGGTGGAGATCAAGACGGAGCTGCCTCAGATTCGAGGAAAGTGGCGAAGTTCGATTGCGCCGAAGAGGCAAATTCAGCTCTGCAAACTGATTCGACCGACGATCCTTCTGCTCGGAGCTCAAAGCGACCGAGGTTAGTCTGGACTCCACAATTACACAAGCGCTTCGTCGATGTCGTCGCTCACCTAGGAATAAAAAGCGCAGTCCCTAAAACAATTATGCAATTGATGAACGTGGAGGGCTTGACAAGGGAGAACGTCGCTAGTCATCTTCAGAAATACCGTCTCTACTTGAAGAGGATGCAAGGATTCTCCAACGACGGACCATCTTCCTCTGATCAGCTCTTAGCTTCAACGCCATTGCCGAATAGCTTGAAAGAGGTCAACTCCGGCGCCAATTCACTAGGAAATGGACATATTCCGATGCCTATTCCGATCCCGTATATGCCACCTCCGATGATGCCTATGCCTGTCTTTGGGATGCGCCCGGCAAATGGCTACCAGGGGTTCGAGTCTTACCCCTACAACTTGATCCAACAGAGAGACTGGTACGGGAATAAGTACGGTTCTGCTTCGTCTTACCCTCACGCTGCTCCCGGTGCTGATGACAAATGA 942 51.59 MGEELKISAYEPDADGSDGEEERVLEWEVGLPNSENLTPLSQVLISPELASAFRISPEPRRTVQDVNRASRTTLSNLRGGQSQALSSNNFKSFDDDRTDDIDPMVVEWEDGGDQDGAASDSRKVAKFDCAEEANSALQTDSTDDPSARSSKRPRLVWTPQLHKRFVDVVAHLGIKSAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGFSNDGPSSSDQLLASTPLPNSLKEVNSGANSLGNGHIPMPIPIPYMPPPMMPMPVFGMRPANGYQGFESYPYNLIQQRDWYGNKYGSASSYPHAAPGADDK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1669228 1670169 - Bma024855.1 Bma07g00088 85225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00088 313 MobiDBLite consensus disorder prediction 215 241 - -
Bma07g00088 313 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 307 - -
Bma07g00088 313 MobiDBLite consensus disorder prediction 133 153 - -
Bma07g00088 313 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 307 IPR044841 GO:0003700|GO:0006355
Bma07g00088 313 MobiDBLite consensus disorder prediction 75 98 - -
Bma07g00088 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 208 IPR017930 -
Bma07g00088 313 SUPERFAMILY Homeodomain-like 150 209 IPR009057 -
Bma07g00088 313 MobiDBLite consensus disorder prediction 75 91 - -
Bma07g00088 313 Gene3D - 149 211 - -
Bma07g00088 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 153 205 IPR006447 GO:0003677
Bma07g00088 313 Pfam Myb-like DNA-binding domain 156 204 IPR001005 -
Bma07g00088 313 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00088 - - - cpep:111787368 387.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02700 Bma-Chr1:84437522 Bma07g00088 Bma-Chr7:1669228 1.23E-44 dispersed
Bma07g00088 Bma-Chr7:1669228 Bma04g01144 Bma-Chr4:28858431 5.80E-24 dispersed
Bma07g00088 Bma-Chr7:1669228 Bma05g01331 Bma-Chr5:52866826 4.31E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma01g00775 . 1 184 G2-like Transcription Factor Family AT5G42630 54.8 1.4e-37 153.3
Bma06g00768 CCT 1 256 G2-like Transcription Factor Family AT1G25550 52.6 1.3e-58 223.4
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT1G25550 56.9 5.0e-53 204.9
Bma14g01699 CCT 19 305 G2-like Transcription Factor Family AT1G68670 51.6 1.2e-64 243.8
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT3G25790 54.9 1.5e-43 173.3
Bma06g00768 CCT 19 298 G2-like Transcription Factor Family AT1G13300 51.2 2.0e-59 226.5
Bma14g01699 CCT 19 294 G2-like Transcription Factor Family AT1G13300 50.2 4.9e-58 221.9
Bma07g00088 . 1 269 G2-like Transcription Factor Family AT3G46640 52.4 4.3e-64 241.9
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT5G05090 53.9 9.2e-73 270.4
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT5G05090 51.9 2.5e-70 262.3
Bma14g01215 . 6 147 G2-like Transcription Factor Family AT5G29000 54.4 1.1e-37 154.1
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.9e-61 231.1
Bma02g01204 BCT 12 310 G2-like Transcription Factor Family AT4G13640 53.2 1.1e-55 213.8
Bma09g00485 BCT 130 376 G2-like Transcription Factor Family AT3G04450 53.0 4.4e-50 195.7
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma12g00569 BCT,CCT 1 275 G2-like Transcription Factor Family AT1G79430 58.3 3.3e-65 245.7
Bma12g00572 . 1 275 G2-like Transcription Factor Family AT1G79430 57.9 7.3e-65 244.6
Bma08g00825 BCT,CCT 1 189 G2-like Transcription Factor Family AT1G79430 59.1 2.9e-53 206.1
Bma06g01283 BCT 36 200 G2-like Transcription Factor Family AT1G79430 61.4 6.9e-39 158.3
Bma02g01204 BCT 36 202 G2-like Transcription Factor Family AT1G79430 61.5 1.1e-36 151.0
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 2.2e-95 345.9
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT3G10760 64.6 1.9e-91 332.8
Bma01g02700 . 1 208 G2-like Transcription Factor Family AT2G40970 64.0 1.9e-64 242.7
Bma05g01331 . 1 207 G2-like Transcription Factor Family AT2G40970 62.7 1.4e-62 236.5
Bma13g00423 . 91 323 G2-like Transcription Factor Family AT4G28610 51.0 2.0e-50 196.8
Bma14g01215 . 4 225 G2-like Transcription Factor Family AT4G28610 50.4 1.5e-42 170.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57567 PF00249 Myb_DNA-binding 1.80E-08 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00088 Bma_Chr07 FPKM 14.118667 17.653378 27.971739 24.487228 13.347811 13.302782 13.550439 19.018942 17.890671 22.270163