Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00088 ATGGGTGAGGAGCTGAAGATTAGCGCGTACGAACCCGATGCTGATGGTAGTGATGGGGAGGAGGAGCGTGTGCTAGAATGGGAGGTGGGTTTGCCCAATTCCGAAAATCTGACTCCTCTATCTCAGGTCTTGATATCGCCGGAGCTTGCCTCCGCCTTTAGAATCTCTCCGGAGCCTCGCCGGACCGTACAGGACGTCAATCGGGCATCTCGGACTACGTTATCTAATCTCCGTGGCGGACAATCACAAGCCCTGTCTTCTAATAATTTCAAGTCGTTCGACGATGATCGCACTGACGATATTGACCCCATGGTCGTAGAGTGGGAGGATGGTGGAGATCAAGACGGAGCTGCCTCAGATTCGAGGAAAGTGGCGAAGTTCGATTGCGCCGAAGAGGCAAATTCAGCTCTGCAAACTGATTCGACCGACGATCCTTCTGCTCGGAGCTCAAAGCGACCGAGGTTAGTCTGGACTCCACAATTACACAAGCGCTTCGTCGATGTCGTCGCTCACCTAGGAATAAAAAGCGCAGTCCCTAAAACAATTATGCAATTGATGAACGTGGAGGGCTTGACAAGGGAGAACGTCGCTAGTCATCTTCAGAAATACCGTCTCTACTTGAAGAGGATGCAAGGATTCTCCAACGACGGACCATCTTCCTCTGATCAGCTCTTAGCTTCAACGCCATTGCCGAATAGCTTGAAAGAGGTCAACTCCGGCGCCAATTCACTAGGAAATGGACATATTCCGATGCCTATTCCGATCCCGTATATGCCACCTCCGATGATGCCTATGCCTGTCTTTGGGATGCGCCCGGCAAATGGCTACCAGGGGTTCGAGTCTTACCCCTACAACTTGATCCAACAGAGAGACTGGTACGGGAATAAGTACGGTTCTGCTTCGTCTTACCCTCACGCTGCTCCCGGTGCTGATGACAAATGA 942 51.59 MGEELKISAYEPDADGSDGEEERVLEWEVGLPNSENLTPLSQVLISPELASAFRISPEPRRTVQDVNRASRTTLSNLRGGQSQALSSNNFKSFDDDRTDDIDPMVVEWEDGGDQDGAASDSRKVAKFDCAEEANSALQTDSTDDPSARSSKRPRLVWTPQLHKRFVDVVAHLGIKSAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGFSNDGPSSSDQLLASTPLPNSLKEVNSGANSLGNGHIPMPIPIPYMPPPMMPMPVFGMRPANGYQGFESYPYNLIQQRDWYGNKYGSASSYPHAAPGADDK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1669228 1670169 - Bma024855.1 Bma07g00088 85225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00088 313 MobiDBLite consensus disorder prediction 215 241 - -
Bma07g00088 313 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 307 - -
Bma07g00088 313 MobiDBLite consensus disorder prediction 133 153 - -
Bma07g00088 313 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 307 IPR044841 GO:0003700|GO:0006355
Bma07g00088 313 MobiDBLite consensus disorder prediction 75 98 - -
Bma07g00088 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 208 IPR017930 -
Bma07g00088 313 SUPERFAMILY Homeodomain-like 150 209 IPR009057 -
Bma07g00088 313 MobiDBLite consensus disorder prediction 75 91 - -
Bma07g00088 313 Gene3D - 149 211 - -
Bma07g00088 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 153 205 IPR006447 GO:0003677
Bma07g00088 313 Pfam Myb-like DNA-binding domain 156 204 IPR001005 -
Bma07g00088 313 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02700 Bma-Chr1:84437522 Bma07g00088 Bma-Chr7:1669228 1.23E-44 dispersed
Bma07g00088 Bma-Chr7:1669228 Bma04g01144 Bma-Chr4:28858431 5.80E-24 dispersed
Bma07g00088 Bma-Chr7:1669228 Bma05g01331 Bma-Chr5:52866826 4.31E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57567 PF00249 Myb_DNA-binding 1.80E-08 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00088 - - cpep:111787368 387.497