Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00121 ATGGAACATACATTCAACTCGCCCGCGAAGTCATCGTCCCTCGTACCACCTTTTCCGAGAGACTCCCGAGGTTCTCTTGAAGTTTTCAATCCTTCTACTAACTCGTCCACATCTCGGCCGACGAACCCCGTCTTCCGACCGAACCCGACATGGCAGAGCTGGATCGAGCCGCGTGATCGCTCGGAACCTGACAATTTCAAGCTTCCATCCAAATTAAGTGGGGCCAATGAAGAGATCACCTCATGGATGGCTCTCAAAGACCCTCCCCCAAAGCAATCACCACCACCATCAACGTTGGTTCAGAAGTCTATTGCTTCGATCATCAACGAAAAATTACCGGCGCCGACTGCGAAACCTGCAGACGAAATCGGCAACGCAGCTCAGCGAGCCGCGGAGTGGGGTCTGGTGCTGAAAACAGATACGGAGACCGGAATGCCTCAAGGAGTGGGAGTGAGAACTTCCGGTGGAGACGAACCGAATATCGGCAAACCGGAGCACTCGAGAGGAACTTCGAAAACCTCGGTTAGAAACTCCGGCGACATGTCGGATGACGGAGGAGGGAGGGAACGAGGGTTCCCGAGAGTGTCAGAGGATTTGAGGGACGCATTGTCGACGTTTCAGCAGACTTTCGTCGTCTCCGACGCGTCGAAACCTGATTATCCGATCATGTATGCGAGCGCCGGATTTTTCAAGATGACGGGTTACACGTCCAAAGAGGTCATCGGAAGAAACTGTCGGTTCATGCAGGGAGCTGATACAGACCCGGAAGATGTGGCGAGGATTAGGGAGGCGTTGCAGGCGGGGACGAGCTACTGTGGGAGGTTATTGAATTATAAGAAAGATGGGACGCCGTTTTGGAATTTACTTACTATTGCACCGATCAAGGACGAGGACGGGAAAGTTCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCACACTGAAGGATATAAAGATCAGATGATGCGTCCAAATGGATTGCCAGAGTCCTTGATTAGATATGATGCTCGTCAAAAAGATGTGGCCAAAAATTCAGTAACTGAACTTGTTCAAGCCATGAAGAGACCACGATCACTCAGTGAATCATCAAGTCATCGTGTGTTTGGAAAATCAGGTGGAGGGGTGCAAGAGGAAAGACCAGAGCCGGCAGTGAGGAGGAAATCAGAGAGTGTTGCTCCGGCCTTACGAAATTCACAAGGCAGTACTCGAAGATCAATGCAAAGTATTAGTGAACTGCCTGAGAAGAAACAAAGAAAATCCACCCGTCTCTCTTTCATGGGGATAATTCGTAAAAATCAGCCGAATAGTGATAGCTTTGGAGATGGCGTAAATGTGGATTTTTTGGAGAGTGACGACGACGATTACGACGATGATGATGAGAGGCCTGAGAGTTTTGATGACAAAGTTAGGCAGAGGGAAATGAGAAAGGGTATGGATCTTGCTACAACACTTGAGCGTATCGAGAAGAACTTTGTCATTACTGATCCAAGGCTGCCTGATAATCCTATCATATTTGCTTCCGATAGCTTCTTGGAGCTGACGGAGTACAGCCGGGAAGAAATCTTAGGAAGAAATTGCAGATTCTTACAAGGCCCTGAGACTGATCGAGGGACTGTAAGGAAGATAAGAGAGGCCATTGACAACCAAACTGAAGTTACTGTGCAGCTCATCAACTACACAAAAAGCGGGAAAAAATTCTGGAATCTGTTTCATCTGCAACCTATGCGAGATCAAAAGGGTGAAGTTCAGTACTTCATTGGAGTCCAACTAGATGGGAGTCAACACGTCGAGCCGCTTAAAAATTGTATTCCGGACGATACTGCGATCGAGAGTGAAAAATTGGTAAGAGAAACAGCAGAAAACGTTGATGTTGCAGTCAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATTTATGGATGAACCATTCCAAAGTTGTTCATCCAAAACCCCACAGGAGAGATTCTCCACCTTGGAAAGCTATTCAGAAGATTCTAGATAGTGGTGAAGAGATAGGCTTGAAACATTTTAGGCCAGTTAAACCTTTGGGATCTGGTGATACTGGCAGCGTGCACTTGGTGGAATTGTGTAGGACTGGTCAATTATTTGCAATGAAGGCTATGGATAAGGGAGCTATGCTTACCCGTAATAAGGTGCACAGAGCTTGTGCTGAGAGAGAAATCCTGGACCTGTTGGACCATCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACAAAAACACATGTTTGTCTGATAACTGATTACTGCCCTGGTGGAGAACTCTTCATGCTTCTGGACAGACAACCAAAAAAAGTCCTGAAGGAAGACGCTGCAAGATTTTATGCTGCAGAAGTTGTCATTGCCTTGGAGTACCTCCACTGTCAAGGTATAATCTACAGGGACTTGAAGCCTGAAAATGTTTTACTCCAGAGCGACGGGCACGTCTCCTTGACGGATTTCGACTTGTCGTGTTTGACTTCTTGCAAACCTCAGCTTTTGATGCCAACTACAAATGAAAAGAAAAAAAAGCATAGGAAAACCCAGCAAGCCCCTATATTTATGGCTGAACCTATGAGAGCATCGAATTCTTTCGTCGGCACCGAAGAATACATAGCTCCGGAAATCATAACTGGGGCTGGTCATACTAGTGCTGTGGACTGGTGGGCATTGGGTATTCTTCTATATGAGATGCTGTATGGATATACGCCATTTAGGGGTAAGACTAGGCAGAAAACTTTCGCCAATATTCTACAGAAAGATCTAAAATTTCCCAGAAGTACGAAGGTTAGTCTCAGCTGCAAGCAGTTAATATACAGATTATTACACAGGGACCCAAAAAATCGATTGGGATCAAGGGAAGGAGCCAGCGAGATTAAGCGTCATCCTTTTTTTCGCGACGTAAATTGGGCACTCATTCGATCCACGAATGCTCCTGAGCTCGAGGCCCCCCTTTTTGAGACGAAAGACGCAGAGCAGAACGTGAAAGACGACGTAGATCCTGCTCTAGATGATTTACAAGCCAATATTTTTTGA 3039 46.33 MEHTFNSPAKSSSLVPPFPRDSRGSLEVFNPSTNSSTSRPTNPVFRPNPTWQSWIEPRDRSEPDNFKLPSKLSGANEEITSWMALKDPPPKQSPPPSTLVQKSIASIINEKLPAPTAKPADEIGNAAQRAAEWGLVLKTDTETGMPQGVGVRTSGGDEPNIGKPEHSRGTSKTSVRNSGDMSDDGGGRERGFPRVSEDLRDALSTFQQTFVVSDASKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPEDVARIREALQAGTSYCGRLLNYKKDGTPFWNLLTIAPIKDEDGKVLKFIGMQVEVSKHTEGYKDQMMRPNGLPESLIRYDARQKDVAKNSVTELVQAMKRPRSLSESSSHRVFGKSGGGVQEERPEPAVRRKSESVAPALRNSQGSTRRSMQSISELPEKKQRKSTRLSFMGIIRKNQPNSDSFGDGVNVDFLESDDDDYDDDDERPESFDDKVRQREMRKGMDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRGTVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLKNCIPDDTAIESEKLVRETAENVDVAVRELPDANMKPEDLWMNHSKVVHPKPHRRDSPPWKAIQKILDSGEEIGLKHFRPVKPLGSGDTGSVHLVELCRTGQLFAMKAMDKGAMLTRNKVHRACAEREILDLLDHPFLPALYASFQTKTHVCLITDYCPGGELFMLLDRQPKKVLKEDAARFYAAEVVIALEYLHCQGIIYRDLKPENVLLQSDGHVSLTDFDLSCLTSCKPQLLMPTTNEKKKKHRKTQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILQKDLKFPRSTKVSLSCKQLIYRLLHRDPKNRLGSREGASEIKRHPFFRDVNWALIRSTNAPELEAPLFETKDAEQNVKDDVDPALDDLQANIF 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1949041 1954630 + Bma024894.1 Bma07g00121 85258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00121 1012 SMART pac_2 272 314 IPR001610 -
Bma07g00121 1012 SMART pac_2 554 596 IPR001610 -
Bma07g00121 1012 MobiDBLite consensus disorder prediction 354 467 - -
Bma07g00121 1012 ProSiteProfiles PAS repeat profile. 195 266 IPR000014 -
Bma07g00121 1012 PANTHER PHOTOTROPIN-1 148 1012 - -
Bma07g00121 1012 MobiDBLite consensus disorder prediction 140 193 - -
Bma07g00121 1012 Gene3D Phosphorylase Kinase; domain 1 677 992 - -
Bma07g00121 1012 MobiDBLite consensus disorder prediction 427 441 - -
Bma07g00121 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Bma07g00121 1012 Pfam Protein kinase domain 681 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00121 1012 SMART pas_2 479 548 IPR000014 -
Bma07g00121 1012 SMART pas_2 197 267 IPR000014 -
Bma07g00121 1012 MobiDBLite consensus disorder prediction 1 103 - -
Bma07g00121 1012 PANTHER FLIPPASE KINASE 1-RELATED 148 1012 - -
Bma07g00121 1012 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524
Bma07g00121 1012 Pfam PAS domain 500 592 IPR000014 -
Bma07g00121 1012 Pfam PAS domain 217 312 IPR000014 -
Bma07g00121 1012 ProSiteProfiles PAC domain profile. 269 323 IPR000700 -
Bma07g00121 1012 SUPERFAMILY PYP-like sensor domain (PAS domain) 493 592 IPR035965 -
Bma07g00121 1012 Gene3D PAS domain 465 630 - -
Bma07g00121 1012 MobiDBLite consensus disorder prediction 393 409 - -
Bma07g00121 1012 CDD PAS 492 592 IPR000014 -
Bma07g00121 1012 ProSiteProfiles PAC domain profile. 551 605 IPR000700 -
Bma07g00121 1012 Gene3D PAS domain 209 366 - -
Bma07g00121 1012 MobiDBLite consensus disorder prediction 447 463 - -
Bma07g00121 1012 SUPERFAMILY PYP-like sensor domain (PAS domain) 218 308 IPR035965 -
Bma07g00121 1012 CDD STKc_phototropin_like 676 985 - -
Bma07g00121 1012 ProSiteProfiles PAS repeat profile. 477 550 IPR000014 -
Bma07g00121 1012 MobiDBLite consensus disorder prediction 26 49 - -
Bma07g00121 1012 SUPERFAMILY Protein kinase-like (PK-like) 653 986 IPR011009 -
Bma07g00121 1012 TIGRFAM sensory_box: PAS domain S-box protein 221 315 IPR000014 -
Bma07g00121 1012 TIGRFAM sensory_box: PAS domain S-box protein 502 592 IPR000014 -
Bma07g00121 1012 ProSiteProfiles Protein kinase domain profile. 678 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00121 1012 MobiDBLite consensus disorder prediction 166 180 - -
Bma07g00121 1012 SMART serkin_6 678 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00121 1012 CDD PAS 222 311 IPR000014 -
Bma07g00121 1012 Gene3D Transferase(Phosphotransferase) domain 1 762 986 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00121 Bma11g00144 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00121 Bma-Chr7:1949041 Bma12g00892 Bma-Chr12:40248529 0 dispersed
Bma07g00509 Bma-Chr7:6325921 Bma07g00121 Bma-Chr7:1949041 2.82E-32 dispersed
Bma06g00908 Bma-Chr6:44167143 Bma07g00121 Bma-Chr7:1949041 3.36E-14 transposed
Bma07g00074 Bma-Chr7:1538350 Bma07g00121 Bma-Chr7:1949041 0 transposed
Bma08g01171 Bma-Chr8:50679270 Bma07g00121 Bma-Chr7:1949041 1.18E-54 transposed
Bma09g00763 Bma-Chr9:46146734 Bma07g00121 Bma-Chr7:1949041 3.56E-66 transposed
Bma10g00360 Bma-Chr10:3382980 Bma07g00121 Bma-Chr7:1949041 1.57E-57 transposed
Bma11g00284 Bma-Chr11:2610828 Bma07g00121 Bma-Chr7:1949041 2.06E-48 transposed
Bma11g00144 Bma-Chr11:1284540 Bma07g00121 Bma-Chr7:1949041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66577 PF00069 Pkinase 5.90E-65 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00121 K20715 - csv:101214662 1547.33